| BasicDefOrg_DefOrgViewerAdapter | |
| mial::BasicDefOrg_DefOrgViewerAdapter | |
| mial::Beh_Fitting< Type, nDims > | Fit the front-most layer of a vessel crawler to the local vasculature |
| mial::Beh_Growing< Type, CrawlerPhysType > | Add a new layer to vessel crawler |
| mial::Beh_Growing< Type, CrawlerPhysType >::behaviorIn | A structure defining the inputs for the behavior |
| mial::Beh_SearchForObject< Type, TInputImage, nDims > | |
| mial::Beh_SearchForObject< Type, TInputImage, nDims >::behaviorIn | A structure defining the inputs for the behavior |
| mial::Beh_Spawning< Type, nDims > | A behavior designed to spawn new vessel crawlers upon the detection of a bifurcation [1] |
| mial::Beh_TranslateAll< Type, nDims > | |
| mial::Beh_TranslateAll< Type, nDims >::behaviorIn | A structure defining the inputs for the behavior |
| mial::Beh_UniformScale< Type, nDims > | |
| mial::Beh_UniformScale< Type, nDims >::behaviorIn | A structure defining the inputs for the behavior |
| mial::Behavior< Type, nDims > | Perform one or many sequences of actions |
| mial::Behavior< Type, nDims >::behaviorIn | A structure defining the inputs of a Behavior |
| mial::Behavior< Type, nDims >::Error | The error structure thrown by behaviors run method when an error is encountered |
| mial::Blank_DefOrgViewerAdapter | |
| mial::ControlCenter< Type, nDims > | The brain of the organism responsible for making decisions and taking action based upon their outcome |
| mial::Ctrl_ScheduleDriven< Type, nDims > | ControlCenter that reads the schedule and peforms the listed behaviors sequentially |
| mial::Ctrl_SensoryDriven< Type, nDims > | |
| mial::Ctrl_VesselCrawler< Type, nDims, CrawlerPhysType > | ControlCenter that specific for vessel crawlers [1] |
| mial::Def_Translation< DataType, nDims, MType, VType > | An example spring-mass deformation that translates the mesh |
| mial::Def_Translation< DataType, nDims, MType, VType >::deformationIn | A structure defining the inputs for the deformation |
| mial::Def_UniformScale< DataType, nDims, MType, VType > | An example spring-mass deformation that scales the organism by increasing the rest lengths of all its springs |
| mial::Def_UniformScale< DataType, nDims, MType, VType >::deformationIn | A structure defining the inputs for the deformation |
| mial::Def_UniformScaleLevelSet< DataType, nDims, TDistanceImageType, MType, VType > | An example level set deformation that scales the deformable organism by adding a single user-provided value to each voxel of the level set |
| mial::Def_UniformScaleLevelSet< DataType, nDims, TDistanceImageType, MType, VType >::deformationIn | A structure defining the inputs for the deformation |
| mial::DefOrgAdapter_VesselCrawler | A deforg adapter for vessel crawlers [1] |
| mial::DefOrgLayerStruct | |
| mial::DefOrgPropertyStruct | |
| DefOrgViewer | |
| DefOrgViewerAdapter | |
| mial::DefOrgViewerAdapterBase | |
| mial::DefOrgViewerAdapterBaseTemplated< ITKPIXELTYPE, MESHDATATYPE > | |
| mial::DefOrgViewerAdapterDynamicLoader | |
| DefOrgViewerGUI | |
| mial::Deformation< DataType, nDims, MType, VType > | An abstract base class for deformations |
| mial::Deformation< DataType, nDims, MType, VType >::DefArgSet | These define the standard "hidden" argument set for a deformation that allow to manipulate the model |
| mial::Deformation< DataType, nDims, MType, VType >::deformationIn | A structure defining the inputs of a Deformation |
| mial::Deformation< DataType, nDims, MType, VType >::Error | The error structure |
| fftw_iodim_do_not_use_me | |
| mial::GenerateDefOrgHelpers | |
| mial::Geom_MeshSpatialObject< dType, nDims, MType, VType > | Derived geometric class based on a spatial object |
| mial::Geom_VesselCrawler< dType, nDims, MType, VType > | Derived geometric class based on a spatial object that includes a specific notion of layers |
| mial::Geom_vGeometry< dType, nDims, MType, VType > | |
| mial::Geometric< dType, nDims, MType, VType > | Topological characteristics of the organism |
| mial::Geometric< dType, nDims, MType, VType >::Error | |
| mial::ImageViewerDescriptor | |
| itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims > | A derived class that implements a deformable organism as an itk::ImageToImageFilter |
| itk::ItkVesselCrawler< TInputImage, TOutputImage, TExternalForceImage, DataType > | A vessel crawler [1] deformable organism for the segmentation and analysis of vasculature in 3D images |
| mial::LevelSetDeformation< DataType, nDims, TDistanceImageType, MType, VType > | This class extends the basic deformation class with specific functionality for level set systems |
| mial::LevelSetDeformation< DataType, nDims, TDistanceImageType, MType, VType >::DefArgSet | A customized argument set |
| itk::Org_EulerSchedule< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims > | A derived class that implements an itkOrganism that posses built in Phys_Euler and Ctrl_Schedule layers, along with corresponding behaviors and deformations |
| itk::Org_LevelSetSchedule< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims > | A derived class that implements an itkOrganism that posses built in Phys_LevelSet and Ctrl_Schedule layers, along with corresponding behaviors and deformations |
| mial::Organism< DataType, nDims > | The abstract base container class that houses and connects all layers of the deformable organism |
| mial::OrganismScheduler | |
| mial::OutputImageDescriptorStruct | |
| mial::Phys_Euler< DataType, TGradientImage, nDims, MType, VType > | A derived physics class capable of carrying out deformations of a spring mass system |
| mial::Phys_Euler< DataType, TGradientImage, nDims, MType, VType >::Error | |
| mial::Phys_LevelSet< DataType, InputImageType, nDims, MType, VType > | A derived physics class capable of carrying out deformations of a spring mass system |
| mial::Phys_VesselCrawlerEuler< DataType, TGradientImage, nDims, MType, VType > | A derived physics class capable of carrying out deformations of a layered spring mass system |
| mial::Phys_VesselCrawlerEuler< DataType, TGradientImage, nDims, MType, VType >::Error | |
| mial::Physics< Type, nDims, MType, VType > | Simluates the deformation dynamics, thereby, modifying actual positions of nodes belonging to the organism |
| mial::Physics< Type, nDims, MType, VType >::Error | A structure containing error information that should be filled and thrown whenever an error in the simulation occurs |
| mial::Sense_AvgIntensity< DataType, TInputImage, nDims > | Derived sensory class for computing image AvgIntensity |
| mial::Sense_AvgIntensity< DataType, TInputImage, nDims >::sensorIn | |
| mial::Sense_AvgIntensity< DataType, TInputImage, nDims >::sensorOut | |
| mial::Sense_Gradient< DataType, TInputImage, TGradientImage, nDims > | Derived sensory class for computing image gradient |
| mial::Sense_Gradient< DataType, TInputImage, TGradientImage, nDims >::sensorIn | |
| mial::Sense_Gradient< DataType, TInputImage, TGradientImage, nDims >::sensorOut | |
| mial::Sense_HessianBased< DataType, TInputImage, TGradientImage, nDims > | Derived sensory class for computing the next location a crawler should grow to [1]. i.e. the centroid of the current vessel infront of the crawler's leading most layer |
| mial::Sense_HessianBased< DataType, TInputImage, TGradientImage, nDims >::In | |
| mial::Sense_HessianBased< DataType, TInputImage, TGradientImage, nDims >::Out | |
| mial::Sense_ProjectiveSpherical< DataType, TInputImage, TGradientImage, nDims > | Derived sensory class for computing the next location a crawler should grow to [1]. i.e. the centroid of the current vessel infront of the crawler's leading most layer |
| mial::Sense_ProjectiveSpherical< DataType, TInputImage, TGradientImage, nDims >::In | |
| mial::Sense_ProjectiveSpherical< DataType, TInputImage, TGradientImage, nDims >::Out | |
| mial::Sense_SenseToGrow< DataType, TInputImage, nDims > | Derived sensory class for computing the next location a crawler should grow to [1]. i.e. the centroid of the current vessel infront of the crawler's leading most layer |
| mial::Sense_SenseToGrow< DataType, TInputImage, nDims >::In | |
| mial::Sense_SenseToGrow< DataType, TInputImage, nDims >::Out | |
| mial::Sensor | Sensors provide the organism with its view of the world |
| mial::Sensor::sensorIn | A structure defining the inputs of a sensor |
| mial::Sensor::sensorOut | A structure defining the output of a sensor |
| mial::SOViewerDescriptor | |
| mial::SpatialObjectDescriptorStruct | |
| mial::SpringMassDeformation< DataType, nDims, MType, VType > | This class extends the basic deformation class with specific functionality for spring mass systems |
| mial::SpringMassDeformation< DataType, nDims, MType, VType >::DefArgSet | A customized argument set |
| mial::UnixOS | |
| mial::VistVTKCellsClass< MESHTYPE > | |
| VistVTKCellsClass | |
| vtkDefOrgViewerWithKW | |
| mial::vtkDefOrgViewerWithKWState | |
| vtkFlRenderWindowInteractor | |
| vtkGenerateDefOrgDialog | |
| vtkImageImport | |
| vtkMyCallback | |
| mial::WindowsOS | |
