itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims > Class Template Reference

A derived class that implements a deformable organism as an itk::ImageToImageFilter. More...

#include <itkOrganism.h>

Inheritance diagram for itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >:

List of all members.

Public Types
typedef TInputImage	InputImageType
typedef TOutputImage	OutputImageType
typedef TExternalForceImage	ExternalForceImageType
typedef ItkOrganism	Self
typedef ImageToImageFilter< InputImageType, OutputImageType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::PixelType	InputPixelType
typedef OutputImageType::PixelType	OutputPixelType
typedef NumericTraits< InputPixelType >::RealType	InputRealType
typedef InputImageType::RegionType	InputImageRegionType
typedef OutputImageType::RegionType	OutputImageRegionType
typedef InputImageType::SizeType	InputSizeType
typedef Organism< DataType, nDims >::GeometricType	GeometricType
	The type used for the geometric layer.
Public Member Functions
	itkStaticConstMacro (InputImageDimension, unsigned int, TInputImage::ImageDimension)
	itkNewMacro (Self)
	itkTypeMacro (ItkOrganism, ImageToImageFilter)
virtual void	GenerateInputRequestedRegion () throw (InvalidRequestedRegionError)
virtual char *	checkMessages ()
virtual bool	postMessage ()
virtual int	run ()
	Public method for simulating the organism.
virtual bool	setDefaultBehaviour ()
virtual bool	setSchedule ()
virtual void	addNode (DataType *n)
virtual void	writeNodesToFile (std::string fileName)
virtual void	readNodesFromFile (std::string fileName)
Protected Member Functions
	ItkOrganism ()
virtual	~ItkOrganism ()
void	GenerateData ()

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Detailed Description

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>
class itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >

A derived class that implements a deformable organism as an itk::ImageToImageFilter.

Those wishing to create new deformable organisms with image inputs/outputs should inherit directly from this class. Building a new organism essentially involves inheriting from this class, and placing customized layers directly in the organisms constructor. See Org_EulerSchedule and Org_LevelSetSchedule for details.

Parameters:

	TInputImage	the input image type
	TOutputImage	the output image type
	TExternalForceImage	the type of image used for external forces
	DataType	The data type to use (eg. float)
	nDims	The dimensionality of the organism

Definition at line 33 of file itkOrganism.h.

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Member Typedef Documentation

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>

typedef TInputImage itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >::InputImageType

Convenient typedefs for simplifying declarations.

Definition at line 41 of file itkOrganism.h.

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>

typedef InputImageType::PixelType itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >::InputPixelType

Image typedef support.

Definition at line 59 of file itkOrganism.h.

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>

typedef ItkOrganism itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >::Self

Standard class typedefs.

Reimplemented in itk::ItkVesselCrawler< TInputImage, TOutputImage, TExternalForceImage, DataType >, itk::Org_EulerSchedule< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >, and itk::Org_LevelSetSchedule< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >.

Definition at line 47 of file itkOrganism.h.

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Member Function Documentation

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>

itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >::itkNewMacro

(

Self

)

Method for creation through the object factory.

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>

itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >::itkStaticConstMacro	(	InputImageDimension	,
		unsigned	int,
		TInputImage::ImageDimension
	)

Extract dimension from input and output image.

Reimplemented in itk::Org_EulerSchedule< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >, and itk::Org_LevelSetSchedule< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >.

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>

itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >::itkTypeMacro	(	ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >	,
		ImageToImageFilter
	)

Run-time type information (and related methods).

template<class TInputImage, class TOutputImage, class TExternalForceImage, class DataType, int nDims>

int itk::ItkOrganism< TInputImage, TOutputImage, TExternalForceImage, DataType, nDims >::run

(

)

[virtual]

Public method for simulating the organism.

Implemenations of this method are in charge of running the cogntive and physics layers.

Implements mial::Organism< DataType, nDims >.

Definition at line 77 of file itkOrganism.cxx.

References mial::Organism< DataType, nDims >::cgLayer, and mial::Organism< DataType, nDims >::physLayer.

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The documentation for this class was generated from the following files:

• C:/cmcintos/defOrgs/source/organism/itkOrganism.h
• C:/cmcintos/defOrgs/source/organism/itkOrganism.cxx

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