C:/cmcintos/defOrgs/source/organism/Organism.h

#if defined (_MSC_VER) && (_MSC_VER >= 1000)
#pragma once
#endif
#ifndef _INC_ORGANISM
#define _INC_ORGANISM

#include "ControlCenter.h"

#include "Physics.h"

#include "Geometric.h"

namespace mial
{


template<class DataType,int nDims>
class Organism
{
protected:
        
        typename Physics<DataType,nDims>::Pointer physLayer;

        typename Geometric<DataType,nDims>::Pointer geomLayer;
        
        typename ControlCenter<DataType,nDims>::Pointer cgLayer;

        DataType runTime;
        
public:

        typedef Geometric<DataType,nDims> GeometricType;
        
        //virtual void addNode(DataType* )=0;


        virtual bool addBehaviour( Behavior<DataType,nDims> * b,bool replacePhys=true ){if(b!=NULL){if(replacePhys){b->setPhysLayer(physLayer);}return cgLayer->addBehavior(b);}else{ return false;}};  // inline


        virtual bool addDeformation( Deformation<DataType,nDims> * d ){ return physLayer->addDeformation(d); }; // inline


        virtual  bool setCognitiveLayer( ControlCenter<DataType,nDims> *c ){ if(c!=NULL){cgLayer = c;return true;}else{return false;}};                 // inline



        virtual bool setPhysicsLayer( Physics<DataType,nDims> * p ){if(p!=NULL){physLayer = p; return true;}else{ return false;} };                                     // inline


        virtual bool setGeometricLayer( Geometric<DataType,nDims> * g ){if(g!=NULL){geomLayer = g; return true;}else{return false;} };                                  // inline
        
        //virtual  bool setDefaultBehaviour() =0;

        
        //virtual  bool setSchedule() =0;

        
        //virtual  bool postMessage() =0;

        
        //virtual  char* checkMessages() =0;


        virtual  int run() =0;

        virtual void setRunTime(DataType r){runTime = r;};

private:

};

} // end namespace mial
#include "Organism.cxx"
#endif /* _INC_ORGANISM*/

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