C:/cmcintos/defOrgs/source/geometrical/abc/Geometric.h

#ifndef _INC_GEOMETRIC
#define _INC_GEOMETRIC

#include "stdafx.h"
#include "itkImage.h"
#include "itkSmartPointer.h"
#include <itkLightObject.h> 

#define medialNode 0
#define boundaryNode 1
#define internalNode 2

namespace mial{


    template < class dType, int nDims, class MType = vnl_matrix<dType>, class VType = vnl_vector<dType> >
        class Geometric:public itk::LightObject
    {
    public:

                //Smartpointer
                typedef Geometric Self;
                typedef itk::SmartPointer<Self>  Pointer;
                typedef itk::SmartPointer<const Self>  ConstPointer;
                typedef itk::WeakPointer<const Self>  ConstWeakPointer;
                //itkNewMacro(Self);

        typedef VType                                   VectorType;

        typedef MType                                   MatrixType;

        typedef typename itk::Image< unsigned char, nDims>      BinaryImageType;

    protected:
                Geometric(){numNodes =0;numConnections=0; topologyChange = true;nodesChange = true;};


        MatrixType mNodes;


        VectorType nodeClass;


        MatrixType mConnections;


        VectorType connectionClass;



        unsigned int numNodes;

        unsigned int numConnections;


        bool topologyChange;


        bool nodesChange;
    public:

        struct Error{
            std::string msg;
        };

                virtual VectorType getCentroid(){
                        VectorType pos = VectorType(nDims);
                        pos.fill(0);
                        for(int i=0;i<numNodes;i++)
                        {
                                pos = pos + mNodes.get_row(i);
                        }
                        pos = pos/numNodes;
                        return pos;};

        

        virtual bool setMatrixNodePositions(MatrixType pos,int* rows)=0;


        virtual bool setMatrixNodePositions(MatrixType pos)=0;

        unsigned int getNumNodes(){return numNodes;};
        


        virtual bool addNodes(MatrixType nodes,VectorType classes)=0;


        virtual bool addConnection(int a, int b)=0;

        

        virtual bool removeNode(int index)=0;


        virtual MatrixType getMatrixNodePositions()=0;


        virtual MatrixType getMatrixConnections()=0;


        virtual void writeNodesToFile(std::string fileName) = 0;



        virtual void readNodesFromFile(std::string fileName) = 0;


        virtual void generateTopologyFromBinaryImage( typename BinaryImageType::Pointer binaryInputImage ) = 0;


                virtual typename itk::Image< unsigned char, nDims>::Pointer generateBinaryImageFromTopology( typename BinaryImageType::SizeType )=0;

        unsigned int getNumConnections(){return numConnections;};


        bool didTopologyChange(){if(topologyChange){topologyChange = false;return true;}else{return false;}};


        bool didNodesChange(){if(nodesChange){nodesChange = false;return true;}else{return false;}};

                
    private:

        virtual void updateMatrixNodePositions()=0;

        virtual void updateMatrixConnections()=0;
    };
}//end mial #include "Geometric.cxx"
#endif /*_INC_GEOMETRIC*/

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