C:/cmcintos/defOrgs/source/physical/abc/Deformation.h

#if defined (_MSC_VER) && (_MSC_VER >= 1000)
#pragma once
#endif
#ifndef _INC_DEFORMATION
#define _INC_DEFORMATION

#include "stdafx.h"
#include <vnl/vnl_matrix.h>
#include <vnl/vnl_vector.h>
#include <vnl/vnl_vector_fixed.h>
#include <vnl/vnl_matrix_fixed.h>
#include "itkSmartPointer.h"
#include "itkLightObject.h"
#include <itkObjectFactory.h>

namespace mial
{
        //-status: 1: complete, 0: incomplete, -1 failed.


        template <class DataType, int nDims,class MType = vnl_matrix<DataType>, class VType = vnl_vector<DataType> >
        class Deformation:public itk::LightObject
        {
        public:
                //Smart pointers
                typedef Deformation Self;
                typedef itk::SmartPointer<Self>  Pointer;
                typedef itk::SmartPointer<const Self>  ConstPointer;
                //itkNewMacro(Self);

        public:
                typedef MType MatrixType;

                typedef VType VectorType;



        struct DefArgSet
                {
                        // TODO:: fill in
                };
                struct Error
                {
                        std::string name;
                        std::string msg;
                };


                struct deformationIn:public itk::LightObject{
            //Define all common deformation inputs here
                        typedef deformationIn Self;
                        typedef itk::SmartPointer<Self>  Pointer;
                        typedef itk::SmartPointer<const Self>  ConstPointer;
                        //typedef itk::WeakPointer<const Self>  ConstWeakPointer;

                        itkNewMacro(Self);

                protected:
                        deformationIn(){};

        };

        private:
                
                int status;

        protected:
                
                std::string name;
        public:
                

                virtual bool run(deformationIn * i,DefArgSet* org, std::stringstream *s = NULL) =0;

                virtual int getStatus();
                
                virtual std::string getName();

        protected:
                Deformation(){};

        };
} // end namespace mial
#include "Deformation.cxx"
#endif /* _INC_DEFORMATION */

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