C:/cmcintos/defOrgs/examples/DefOrgViewerWithKW/Source/DefOrgAdapter/BlankDefOrgAdapter/Blank_DefOrgViewerAdapter.h

#ifndef __Blank_DefOrgViewerAdapter_h
#define __Blank_DefOrgViewerAdapter_h

#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"
//#include "itkMeanImageFilter.h"
//#include "itkBinaryThresholdImageFilter.h"
//#include "itkCovariantVector.h"

#include <iostream>
//#include "itkOrganism.h"
//#include "Phys_Euler.h"
//#include "Ctrl_ScheduleDriven.h"
//#include "Beh_TranslateAll.h"
//#include "Def_Translation.h"
//#include "Sense_Gradient.h"
//#include "Geom_MeshSpatialObject.h"
//#include "Phys_LevelSet.h"

#include "DefOrgViewerAdapterBaseTemplated.h"

#include <vtksys/SystemTools.hxx>
#include <vtksys/CommandLineArguments.hxx>

namespace mial{
#define N_DIMS 3
typedef unsigned char                                                                   PixelType;
typedef float                                                                                   DataType;

class Blank_DefOrgViewerAdapter:public DefOrgViewerAdapterBaseTemplated<PixelType,DataType>{
public:
        // typedefs for the defOrg:
                
        /*typedef        Geom_MeshSpatialObject< DataType, N_DIMS >             GeometricType;
        typedef itk::CovariantVector< DataType, N_DIMS >                GradientPixelType;
        typedef itk::Image< GradientPixelType, N_DIMS >                 GradientImageType;
        typedef Phys_LevelSet< DataType, ImageType, N_DIMS >    LevelSetPhysicsType;
        typedef Phys_Euler< DataType, 
                GradientImageType, N_DIMS >                                                     EulerPhysicsType;
        typedef Sense_Gradient< DataType, ImageType, 
                GradientImageType, N_DIMS >                                                     GradientSensorType;
        typedef Ctrl_ScheduleDriven<DataType, N_DIMS>                   CognitiveType;
        typedef Beh_TranslateAll<DataType, N_DIMS>                              Beh_TranslateAllType;
        typedef Def_Translation<DataType, N_DIMS>                               Def_TranslateAllType;

        typedef itk::ItkOrganism < ImageType, ImageType,
                GradientImageType, DataType, N_DIMS >                           OrganismType;

        typedef itk::DefaultDynamicMeshTraits<
                DataType, N_DIMS, N_DIMS >                                                      MeshTrait;
        typedef  itk::Mesh< DataType, N_DIMS, MeshTrait >               MeshType;
        typedef  MeshType::Pointer                                                              MeshTypePointer;*/

        Blank_DefOrgViewerAdapter();

        virtual void SetupOrganism();
        virtual void UpdateOrganism();
        virtual void PopulateVtkImage(); 
        virtual void PopulateVtkUnstructuredGrid(vtkUnstructuredGrid* vtkGrid /*in/out*/);
        virtual void PopulateItkScene();

        virtual void HandleUserMouseInteraction(vtkTransform* userTransformation);

        virtual int MaxNumberOfOutputItkSpatialObjects();
        virtual int MaxNumberOfOutputImages();
        
private:
        /*OrganismType::Pointer                 testOrg;
        LevelSetPhysicsType                             levelSetPhysLayer;
        EulerPhysicsType*                               eulerPhysLayerPointer;
        GradientSensorType::sensorIn    sensorInput;
        GradientSensorType                              gradientSensor;
        GeometricType*                                  geomLayerPointer;
        CognitiveType*                                  cognitiveLayerPointer;
        Beh_TranslateAllType*                   beh1;
        Def_TranslateAllType*                   def1;   */                                      

};
}

#endif

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