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Publications of year 2024
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Articles in journal, book chapters
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Kumar Abhishek,
Colin J. Brown,
and Ghassan Hamarneh.
Multi-Sample $\zeta$-mixup: Richer, More Realistic Synthetic Samples from a $p$-Series Interpolant.
Journal of Big Data,
11(43):1-41,
3 2024.
Keyword(s): Machine Learning,
Deep Learning,
Synthesis/Simulation/Augmentation,
Classification,
Dermatology.
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Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
GC2: Generalizable Continual Classification of Medical Images.
IEEE Transactions on Medical Imaging (IEEE TMI),
000(000):000-000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Continual Learning,
Domain Generalization.
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Saeed Izadi,
Isaac Shiri,
Carlos Uribe,
Parham Geramifar,
Habib Zaidi,
Arman Rahmim,
and Ghassan Hamarneh.
Enhanced Direct Joint Attenuation and Scatter Correction of Whole-Body PET Images via Context-Aware Deep Networks.
Zeitschrift fuer Medizinische Physik,
000(000):000-000,
2024.
Keyword(s): Enhancement/Restoration/Denoising,
Deep Learning,
Functional/Molecular/Dynamic Imaging.
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Ivan Robert Nabi,
Ben Cardoen,
Khater,
Guang Gao,
Timothy H. Wong,
and Ghassan Hamarneh.
AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth.
The Journal Of Cell Biology (JCB),
000(jcb.000):000-000,
000 2024.
Keyword(s): Super Resolution Microscopy,
Deep Learning,
Machine Learning,
Weak Supervision,
Survey/Review.
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Ashish Sinha,
Jeremy Kawahara,
Arezou Pakzad,
Kumar Abhishek,
Matthieu Ruthven,
Enjie Ghorbel,
Anis Kacem,
Djamila Aouada,
and Ghassan Hamarneh.
DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images (Sinha, Kawahara, Pakzad: Joint first authors).
Medical Image Analysis (MedIA),
000(103145):000,
2024.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Segmentation,
Synthesis/Simulation/Augmentation,
Datasets.
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Hanene Ben Yedder,
Ben Cardoen,
Majid Shokoufi,
Farid Golnaraghi,
and Ghassan Hamarneh.
Deep Orthogonal Multi-Wavelength Fusion for Tomogram-Free Diagnosis in Diffuse Optical Imaging.
Computers in Biology and Medicine (CIBM),
000:000,
2024.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning.
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Kumar Abhishek and Ghassan Hamarneh.
Lesion Elevation Prediction from Skin Images Improves Diagnosis.
In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC),
pages 000–000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning.
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Kumar Abhishek,
Jeremy Kawahara,
and Ghassan Hamarneh.
Segmentation Style Discovery: Application to Skin Lesion Images.
In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC),
pages 000–000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation.
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Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
Continual-Zoo: Leveraging Zoo Models for Continual Classification of Medical Images.
In IEEE Computer Vision and Pattern Recognition (IEEE CVPR) Workshop on Continual Learning (CLVision),
pages 000-000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Continual Learning,
Domain Generalization.
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Nourhan Bayasi,
Fayyad Jamil,
Alceu Bissoto,
Ghassan Hamarneh,
and Rafeef Garbi.
BiasPruner: Debiased Continual Learning for Medical Image Classification.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 000,
pages 000-000,
2024.
Keyword(s): Classification,
Dermatology,
Machine Learning,
Deep Learning,
Continual Learning,
AI Bias and Fairness.
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Ben Cardoen,
Kurt Vandevoorde,
Guang Gao,
Milene Ortiz-Silva,
Parsa Alan,
Ellie Tiliakou,
William Liu,
A. Wayne Vogl,
Ghassan Hamarneh,
and Ivan Robert Nabi.
Membrane contact site detection (MCS-DETECT) reveals dual control of rough mitochondria–ER contacts (Cardoen, Vandevoorde, Gao, and Ortiz: Joint first authors; Hamarneh and Nabi: Joint senior authors).
In Keystone Symposia on Molecular and Cellular Biology - Organelle Membrane Contact Sites in Health and Disease (Joint with: Mitochondria Signaling and Disease),
pages 1,
2024.
Keyword(s): Super Resolution Microscopy,
Object Detection,
Restoration,
Reconstruction,
Interaction.
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Adriano D'Alessandro,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
AFreeCA: Annotation-Free Counting for All.
In European Conference on Computer Vision (ECCV),
pages 000-000,
2024.
Keyword(s): Deep Learning,
Counting,
Ranking.
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Tanya Gatsak,
Kumar Abhishek,
Hanene Ben Yedder,
Saeid Asgari Taghanaki,
and Ghassan Hamarneh.
PET-Disentangler: PET Lesion Segmentation via Disentangled Healthy and Disease Feature Representations.
In The Society of Nuclear Medicine and Molecular Imaging (SNMMI) Annual Meeting,
pages 1,
2024.
Keyword(s): Enhancement/Restoration/Denoising,
Deep Learning,
Functional/Molecular/Dynamic Imaging,
Segmentation.
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Aliasghar Khani,
Saeid Asgari Taghanaki,
Aditya Sanghi,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
SLiMe: Segment Like Me.
In International Conference on Learning Representations (ICLR),
2024.
Keyword(s): Deep Learning,
Machine Learning,
One-/Few-Shot Learning,
Segmentation,
Diffusion Models,
Foundational Models.
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Ashish Sinha and Ghassan Hamarneh.
TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields.
In ,
volume 000,
pages 000-000,
2024.
Keyword(s): Deep Learning,
Diffusion Models,
Anatomical Trees and Tubular Structures,
Neural Fields,
Synthesis/Simulation/Augmentation.
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Jieyi Zheng,
Ben Cardoen,
Ghassan Hamarneh,
and Ivan Robert Nabi.
Comparison of Specificity of Confocal and Super-Resolution Approaches to Detecting Mitochondria-ER Contact Sites (Hamarneh and Nabi: Joint senior authors).
In Keystone Symposia on Molecular and Cellular Biology - Organelle Membrane Contact Sites in Health and Disease (Joint with: Mitochondria Signaling and Disease),
pages 1,
2024.
Keyword(s): Super Resolution Microscopy,
Object Detection.
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Elise Li Zheng,
Weina Jin,
Ghassan Hamarneh,
and Sandra Soo-Jin Lee.
What does “explainable” AI explain? Power dynamics and AI explainability in precision medicine.
In Congress on Ethical, Legal, and Social Implications (ELSI): AI and machine learning | Equity and justice in genetics | Precision Medicine,
2024.
Keyword(s): Explainable AI,
Ethical AI,
Societal Implications of AI.
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Kumar Abhishek,
Aditi Jain,
and Ghassan Hamarneh.
Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets.
Technical report arXiv:2401.14497,
1 2024.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Software and Tools,
Datasets.
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Y. Lydia Li,
Ismail M. Khater,
Christian Hallgrimson,
Timothy H. Wong,
Ghassan Hamarneh,
and Ivan Robert Nabi.
Super-resolution single molecule network analysis (SuperResNET) detects changes to clathrin structure by small molecule inhibitors (Wong and Khater: Joint first authors; Hamarneh and Nabi: Joint senior authors).
Technical report biorxiv:2024.03.07.583946,
3 2024.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Color/Multichannel/Vector-valued,
Image Reconstruction.
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Y. Lydia Li,
Ismail M. Khater,
Christian Hallgrimson,
Timothy H. Wong,
Ghassan Hamarneh,
and Ivan Robert Nabi.
SuperResNET single molecule localization microscopy model-free network analysis of Nup96 achieves molecular resolution (Li and Khater: Joint first authors; Hamarneh and Nabi: Joint senior authors).
Technical report biorxiv:2024.03.12.584716,
3 2024.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Color/Multichannel/Vector-valued,
Image Reconstruction.
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Ashwin Samudre,
Guang Gao,
Ben Cardoen,
Ivan Robert Nabi,
and Ghassan Hamarneh.
nERdy: network analysis of endoplasmic reticulum (Nabi and Hamarneh: Joint senior authors).
Technical report biorxiv:2024.02.20.581259,
2 2024.
Keyword(s): Super Resolution Microscopy,
Software and Tools,
Network Modelling and Analysis,
Machine Learning,
Deep Learning,
Anatomical Trees and Tubular Structures,
Synthesis/Simulation/Augmentation.
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Ashish Sinha and Ghassan Hamarneh.
TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields.
Technical report arxiv.2403.08974,
3 2024.
Keyword(s): Deep Learning,
Diffusion Models,
Anatomical Trees and Tubular Structures,
Neural Fields,
Synthesis/Simulation/Augmentation.
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Last modified: Thu Aug 1 12:06:05 2024
Author: hamarneh.
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