1. Andrew Top. Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, January 2012.

1. Chris McIntosh and Ghassan Hamarneh. Medial-based Deformable Models in Non-convex Shape-spaces for Medical Image Segmentation using Genetic Algorithms. IEEE Transactions on Medical Imaging (IEEE TMI), 31(1):33-50, 2012. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life, Optimization.



2. Bernard Ng, Ghassan Hamarneh, and Rafeef Abugharbieh. Modeling Brain Activation in fMRI Using Group MRF. IEEE Transactions on Medical Imaging (IEEE TMI), 31(5):1113-1123, 2012. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based.



3. Peyman Rahmati, Andy Adler, and Ghassan Hamarneh. Mammography Segmentation with Maximum Likelihood Active Contours. Medical Image Analysis (MedIA), 16(6):1167-1186, 2012. Keyword(s): Segmentation, Deformable Models, Optimization.



4. Lisa Y. W. Tang, Tim Bressmann, and Ghassan Hamarneh. Tongue contour tracking in dynamic ultrasound via higher-order MRFs and efficient fusion moves. Medical Image Analysis (MedIA), 16(8):1503-1520, 2012. Keyword(s): Tracking, Registration and Matching, Graph based.

1. Shawn Andrews, Brian G. Booth, Steven Miller, Vann Chau, Ken Poskitt, and Ghassan Hamarneh. Towards highly-automated detection of white matter injury in prematurely born babies from diffusion tensor MRI. In NeuroDevNet Brain Development Conference, pages 99, 2012. Keyword(s): Diffusion MRI/Tensor-valued, Neurodevelopment.



2. Daniel Baboiu and Ghassan Hamarneh. Vascular Bifurcation Detection in Scale-Space. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 41-46, 2012. Keyword(s): Anatomical Trees and Tubular Structures, Bifurcation/Junction.



3. Brian G. Booth and Ghassan Hamarneh. Competitive Tractography for Extracting Brain Connectivity from Diffusion MRI. In The 6th Annual Canadian Neuroscience Meeting (CAN-ACN), 2012. Keyword(s): Diffusion MRI/Tensor-valued, Graph based.



4. Brian G. Booth and Ghassan Hamarneh. Global Multi-Region Competitive Tractography. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 73-78, 2012. Keyword(s): Diffusion MRI/Tensor-valued, Uncertainty.



5. Brian G. Booth, Steven Miller, Vann Chau, Ken Poskitt, and Ghassan Hamarneh. Modelling the Healthy Premature Infant Brain. In Child and Family Research Imaging Facility Grand Opening Event, 2012. Keyword(s): Diffusion MRI/Tensor-valued, Neurodevelopment.



6. Hengameh Mirzaalian, Tim K. Lee, and Ghassan Hamarneh. Learning Features for Streak Detection in Dermoscopic Color Images using Localized Radial Flux of Principal Intensity Curvature. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 97-101, 2012. Keyword(s): Color/Multichannel/Vector-valued, Machine Learning, Anatomical Trees and Tubular Structures, Dermatology.



7. Hengameh Mirzaalian, Tim K. Lee, and Ghassan Hamarneh. Uncertainty-based Feature Learning for Skin Lesion Matching using a High Order MRF Optimization Framework. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 7511, pages 98-105, 2012. Keyword(s): Machine Learning, Uncertainty, Optimization, Dermatology.



8. Hengameh Mirzaalian, Ahmed Saad, and Ghassan Hamarneh. Iterative Segmentation and Motion Correction for Dynamic PET Images based on Radioactive Tracer Kinetics. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 265-270, 2012. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Registration and Matching, Tracking.



9. Krishna Nand, Ghassan Hamarneh, and Rafeef Abugharbieh. Diffusion Tensor Image Processing using Biquaternions. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 538-541, 2012. Keyword(s): Diffusion MRI/Tensor-valued.



10. Fahime Sheikhzadeh, Roger Tam, and Ghassan Hamarneh. Spatial Distribution of Lesions as a Surrogate Biomarker for Disability in Multiple Sclerosis. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 273-278, 2012. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI.



11. Lisa Y. W. Tang, Alfred O Hero, and Ghassan Hamarneh. Locally-Adaptive Similarity Metric for Deformable Medical Image Registration. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 728-731, 2012. Keyword(s): Machine Learning, Registration and Matching.

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