1. Ahmed Saad. Analysis and Visualization Techniques for Dynamic Emission Tomography Images. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, September 2013. [bibtex-key = phd2013saad]



2. Zhe Fang. Visualization and Exploration of Time-Varying and Diffusion Tensor Medical Image Data Sets. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, January 2008. [bibtex-key = msc2008fang]

1. Ghassan Hamarneh, Chris McIntosh, and Mark S. Drew. Perception-based Visualization of Manifold-Valued Medical Images using Distance-Preserving Dimensionality Reduction. IEEE Transactions on Medical Imaging (IEEE TMI), 30(7):1314-1327, 2011. Keyword(s): Color/Multichannel/Vector-valued, Visualization, Diffusion MRI/Tensor-valued, Functional/Molecular/Dynamic Imaging. [bibtex-key = tmi2011b]



2. Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. IEEE Transactions on Visualization and Computer Graphics (IEEE TVCG) (Special Issue of the IEEE Visualization Conference 2010), 16(6):1366-1375, 2010. Keyword(s): User Interaction, Segmentation, Uncertainty, Spatio-Temporal. [bibtex-key = tvcg2010]



3. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. Computer Graphics Forum (CGF) (Special Issue of the proceedings of Eurographics/IEEE-VGTC Symposium on Visualization 2010), 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = cgf2010]

1. Weina Jin, Sheelagh Carpendale, Ghassan Hamarneh, and Diane Gromala. Bridging AI Developers and End Users: an End-User-Centred Explainable AI Taxonomy and Visual Vocabularies. In IEEE Visualization (IEEE Vis), 2019. Keyword(s): Explainable AI (XAI), Deep Learning, User Interaction, Visualization. [bibtex-key = vis2019]



2. Jeremy Kawahara and Ghassan Hamarneh. Image Content-Based Navigation of Skin Conditions. In World Congress of Dermatology (WCD), 2015. Keyword(s): Dermatology, Color/Multichannel/Vector-valued, Visualization, User Interaction. [bibtex-key = wcd2015a]



3. Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. In IEEE Visualization (IEEE Vis) (also appears in the Special Issue of the Journal IEEE Transactions on Visualization and Computer Graphics), pages 1366-1375, 2010. Keyword(s): User Interaction, Segmentation, Uncertainty, Spatio-Temporal. [bibtex-key = vis2010]



4. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. In Eurographics/IEEE-VGTC Symposium on Visualization (IEEE EuroVis) (also appears in the Special Issue of the Journal Computer Graphics Forum)., volume 29, pages 1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = eurovis2010]



5. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. In SFU Exchange, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = sfu_exchange2010a]



6. Mark S. Drew and Ghassan Hamarneh. Visualizing Diffusion Tensor Dissimilarity using an ICA Based Perceptual Color Metric. In Color Imaging (IS&T/SID CI), pages 42-47, 2007. Keyword(s): Visualization, Diffusion MRI/Tensor-valued, Color. [bibtex-key = ci2007]



7. Zhe Fang, Torsten Moeller, Ghassan Hamarneh, and Anna Celler. Visualization and Exploration of Time-Varying Medical Image Data Sets. In Graphics Interface (GI), pages 281-288, 2007. Keyword(s): Visualization, User Interaction, Spatio-Temporal, Segmentation. [bibtex-key = gi2007]



8. Ghassan Hamarneh, Aaron Ward, and Richard Frank. Quantification and Visualization of Localized and Intuitive Shape Variability using a Novel Medial-Based Shape Representation. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 1232-1235, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = isbi2007a]



9. Ahmed Saad, Ben Smith, Ghassan Hamarneh, and Torsten Moeller. Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4792, pages 726-733, 2007. Keyword(s): Segmentation, Functional/Molecular/Dynamic Imaging, Uncertainty, Graph based. [bibtex-key = miccai2007b]



10. Yonas Weldeselassie, Ghassan Hamarneh, and Daniel Weiskopf. Tensor Distance Based Adaptive Seeding Algorithm for DT-MRI Visualization. In SPIE Medical Imaging, volume 65092M, pages 1-9, 2007. Keyword(s): Visualization, Diffusion MRI/Tensor-valued. [bibtex-key = spiemi2007c]



11. Aaron Ward, Mark Schweitzer, and Ghassan Hamarneh. Computational and Visualization Techniques for Understanding the Shape Variations of the Bicipital Groove of the Proximal Humerus. In Annual meeting of the Society for Computer Applications in Radiology (SCAR), pages 47-49, 2006. Keyword(s): Visualization, Shape Modelling and Analysis. [bibtex-key = scar2006a]

1. Ghassan Hamarneh, Chris McIntosh, and Mark S. Drew. Perception-based Visualization of High-Dimensional Medical Images Using Distance Preserving Dimensionality Reduction. Technical report TR 2009-22, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 11 2009. Keyword(s): Color/Multichannel/Vector-valued, Visualization, Diffusion MRI/Tensor-valued, Functional/Molecular/Dynamic Imaging. [bibtex-key = sfu_cs2009_22]

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