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Publications about 'Shape Modelling and Analysis'
Thesis
  1. Ghassan Hamarneh. Towards Intelligent Deformable Models for Medical Image Analysis. PhD thesis, Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, 2001. ISBN: 91-7291-082-8. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Bifurcation/Junction. [bibtex-key = phd2001]


  2. Ghassan Hamarneh. Deformable Spatio-Temporal Shape Modeling. Licentiate thesis, Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, 1999. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = lic1999]


Articles in journal, book chapters
  1. Shawn Andrews and Ghassan Hamarneh. The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation. IEEE Transactions on Medical Imaging (IEEE TMI), 34(9):1773-1787, 2015. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2015a]


  2. Shawn Andrews, Neda Changizi, and Ghassan Hamarneh. The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation. IEEE Transactions on Medical Imaging (IEEE TMI), 33(9):1890-1899, 2014. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2014b]


  3. Manku Rana, Ghassan Hamarneh, and James Wakeling. 3D curvatures of muscle fascicles in triceps surae. Journal of Applied Physiology, 117(11):1388-1397, 2014. Keyword(s): Shape Modelling and Analysis. [bibtex-key = jappl2014]


  4. Manku Rana, Ghassan Hamarneh, and James Wakeling. 3D Fascicle Orientations in Triceps Surae. Journal of Applied Physiology, 115(1):116-125, 2013. Keyword(s): Shape Modelling and Analysis. [bibtex-key = jappl2013]


  5. Oliver van Kaick, Hao (Richard) Zhang, and Ghassan Hamarneh. Bilateral Maps for Partial Matching. Computer Graphics Forum (CGF), 32(6):189-200, 2013. Keyword(s): Registration and Matching, Shape Modelling and Analysis. [bibtex-key = cgf2013]


  6. Chris McIntosh and Ghassan Hamarneh. Medial-based Deformable Models in Non-convex Shape-spaces for Medical Image Segmentation using Genetic Algorithms. IEEE Transactions on Medical Imaging (IEEE TMI), 31(1):33-50, 2012. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life, Optimization. [bibtex-key = tmi2012a]


  7. Bahareh HajGhanbari, Ghassan Hamarneh, Neda Changizi, Aaron Ward, and W. Darlene Reid. MRI-based 3D shape analysis of thigh muscles: Patients with chronic obstructive pulmonary disease versus healthy adults. Academic Radiology, 18(2):155-166, 2011. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = ar2011]


  8. Preet Jassi and Ghassan Hamarneh. VascuSynth: Vascular Tree Synthesis Software. Insight Journal, January-June:1-12, 2011. Keyword(s): Segmentation, Validation, Shape Modelling and Analysis, Software and Tools, Anatomical Trees and Tubular Structures, Synthesis/Simulation/Augmentation, Datasets. [bibtex-key = ij2011]


  9. Andrea Tagliasacchi, Matt Olson, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. Computer Graphics Forum (CGF) (Special Issue of Symposium on Geometry Processing 2011), 30(5):1563-1571, 2011. Keyword(s): Deformable Models, Shape Modelling and Analysis. [bibtex-key = cgf2011c]


  10. Oliver van Kaick, Andrea Tagliasacchi, Oana Sidi, Hao (Richard) Zhang, Daniel Cohen-Or, Lior Wolf, and Ghassan Hamarneh. Prior Knowledge for Part Correspondence. Computer Graphics Forum (CGF) (Special Issue of Eurographics 2011), 30(2):1-10, 2011. Keyword(s): Segmentation, Registration and Matching, Shape Modelling and Analysis. [bibtex-key = cgf2011b]


  11. Oliver van Kaick, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. A Survey on Shape Correspondence. Computer Graphics Forum (CGF) (extended version of Eurographics 2010 STAR), 30(6):1681-1707, 2011. Keyword(s): Survey/Review, Registration and Matching, Shape Modelling and Analysis. [bibtex-key = cgf2011a]


  12. Ghassan Hamarneh and Preet Jassi. VascuSynth: Simulating Vascular Trees for Generating Volumetric Image data with Ground Truth Segmentation and Tree Analysis. Computerized Medical Imaging and Graphics (CMIG), 34(8):605-616, 2010. Keyword(s): Segmentation, Validation, Shape Modelling and Analysis, Software and Tools, Anatomical Trees and Tubular Structures, Synthesis/Simulation/Augmentation. [bibtex-key = cmig2010]


  13. Aaron Ward and Ghassan Hamarneh. GMAT: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Intelligent Pruning. IEEE Transactions Pattern Analysis and Machine Intelligence (IEEE TPAMI), 32(6):1084-1096, 2010. Keyword(s): Medial-based Shape Representation, Shape Modelling and Analysis, Registration and Matching. [bibtex-key = pami2010]


  14. Oliver van Kaick, Ghassan Hamarneh, Aaron Ward, Mark Schweitzer, and Hao (Richard) Zhang. Learning Fourier Descriptors for Computer-Aided Diagnosis of the Supraspinatus. Academic Radiology, 17(8):1040-1049, 2010. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = ar2010a]


  15. Ghassan Hamarneh and Xiaoxing Li. Watershed Segmentation using Prior Shape and Appearance Knowledge. Journal of Image and Vision Computing, 27(1-2):59-68, 2009. Keyword(s): Segmentation, Shape Modelling and Analysis. [bibtex-key = jivc2009]


  16. Aaron Ward, Ghassan Hamarneh, and Mark Schweitzer. 3D Bicipital Groove Shape Analysis and Relationship to Tendopathy. Journal of Digital Imaging, 21(2):219-234, 2008. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = jdi2008a]


  17. Aaron Ward, Ghassan Hamarneh, Reem Ashry, and Mark Schweitzer. 3D Shape Analysis of the Supraspinatus Muscle: A Clinical Study of the Relationship between Shape and Pathology. Academic Radiology, 14(10):1229-1241, 2007. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = ar2007]


  18. Omer Ishaq, Ghassan Hamarneh, Roger Tam, Anthony Traboulsee, and David Li. Effects of mid sagittal plane selection on corpus callosal area. Multiple Sclerosis (special supplementary journal issue of all oral presentations in the 22nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRMS) 2006). Also appeared in ECTRMS 2006, 12(1):S173, 2006. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = msj2006]


  19. Ghassan Hamarneh, Rafeef Abugharbieh, and Tim McInerney. Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation.. International Journal of Shape Modeling (IJSM), 10(2):187-209, 2004. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Medial-based Shape Representation. [bibtex-key = ijsm2004]


  20. Ghassan Hamarneh and Tomas Gustavsson. Deformable spatio-temporal shape models: extending active shape models to 2D+time.. Journal of Image Vision Computing, 22(6):461-470, 2004. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = jivc2004]


  21. Ghassan Hamarneh. Towards Intelligent Deformable Models for Medical Image Analysis. In R Haux and C Kulikowski, editors, Summary of results from the VISIT (Visual Information Technology Program) 1997-2002, number 32, pages 144-147. Centre for Image Analysis, Uppsala University, 2004. ISSN: ISSN 1100-6641. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life. [bibtex-key = VISITsummary2004_97_02]


Conference articles
  1. Mengliu Zhao and Ghassan Hamarneh. Retinal Image Classification via Vasculature-guided Sequential Attention. In International Conference on Computer Vision workshop on Visual Recognition for Medical Images (ICCV VRMI), pages 381-387, 2019. Keyword(s): Anatomical Trees and Tubular Structures, Classification, Shape Modelling and Analysis, Machine Learning, Deep Learning. [bibtex-key = iccv_vrmi2019a]


  2. Mengliu Zhao and Ghassan Hamarneh. Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 11861, pages 637-645, 2019. Keyword(s): Machine Learning, Deep Learning, Segmentation, Anatomical Trees and Tubular Structures, Shape Modelling and Analysis, Bifurcation/Junction. [bibtex-key = miccai_mlmi2019a]


  3. Zahra Mirikharaji and Ghassan Hamarneh. Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 11073, pages 737-745, 2018. Keyword(s): Machine Learning, Deep Learning, Segmentation, Dermatology, Color/Multichannel/Vector-valued, Shape Modelling and Analysis. [bibtex-key = miccai2018a]


  4. Mengliu Zhao and Ghassan Hamarneh. TreeNet: Multi-Loss Deep Learning Network to Predict Branch Direction for Extracting 3D Anatomical Trees. In Medical Image Computing and Computer-Assisted Intervention Workshop on Deep Learning in Medical Image Analysis (MICCAI DLMIA), volume 11045, pages 47-55, 2018. Keyword(s): Anatomical Trees and Tubular Structures, Shape Modelling and Analysis, Machine Learning, Deep Learning, Bifurcation/Junction. [bibtex-key = miccai_dlmia2018]


  5. Mengliu Zhao and Ghassan Hamarneh. Bifurcation Localization in 3D Images via Evolutionary Geometric Deformable Templates. In Canadian Conference on Computer and Robot Vision (CRV), pages 124-130, 2017. Keyword(s): Anatomical Trees and Tubular Structures, Deformable Models, Shape Modelling and Analysis, Bifurcation/Junction. [bibtex-key = crv2017a]


  6. Mengliu Zhao, Brandon Miles, and Ghassan Hamarneh. Leveraging Tree Statistics for Extracting Anatomical Trees from 3D Medical Images. In Canadian Conference on Computer and Robot Vision (CRV), pages 131-138, 2017. Keyword(s): Anatomical Trees and Tubular Structures, Shape Modelling and Analysis, Bifurcation/Junction. [bibtex-key = crv2017b]


  7. Mengliu Zhao, Brandon Miles, and Ghassan Hamarneh. Tree Structure Analysis in 3D Medical Images. In 2nd Annual Health Technology Symposium, Vancouver, Canada, pages 1, 2017. Keyword(s): Anatomical Trees and Tubular Structures, Shape Modelling and Analysis, Bifurcation/Junction. [bibtex-key = healthtech2017f]


  8. Jeremy Kawahara, Chris McIntosh, Roger Tam, and Ghassan Hamarneh. Augmenting Auto-context with Global Geometric Features for Spinal Cord Segmentation. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 8184, pages 212-219, 2013. Keyword(s): Segmentation, Machine Learning, Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = miccai_mlmi2013a]


  9. Jeremy Kawahara, Chris McIntosh, Roger Tam, and Ghassan Hamarneh. Novel Morphological and Appearance Features for Predicting Physical Disability from MR Images in Multiple Sclerosis Patients. In Medical Image Computing and Computer-Assisted Intervention Workshop on Computational Methods and Clinical Applications for Spine Imaging (MICCAI CSI), pages 1-13, 2013. Keyword(s): Machine Learning, Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = miccai_csi2013]


  10. Manku Rana, Ghassan Hamarneh, and James Wakeling. Changes to 3D muscle fascicle geometry during contraction. In American Society of Biomechanics (ASB), 2013. Keyword(s): Shape Modelling and Analysis, Tracking. [bibtex-key = asb2013]


  11. Fahime Sheikhzadeh, Roger Tam, and Ghassan Hamarneh. Spatial Distribution of Lesions as a Surrogate Biomarker for Disability in Multiple Sclerosis. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 273-278, 2012. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = mmbia2012e]


  12. Bahareh HajGhanbari, Ghassan Hamarneh, Neda Changizi, Aaron Ward, and W. Darlene Reid. 3D shape analysis of thigh muscles: people with Chronic Obstructive Pulmonary Disease versus healthy older adults. In Canadian Physiotherapy Association Congress, pages 1, 2011. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = cpa2011]


  13. Bahareh HajGhanbari, Ghassan Hamarneh, Neda Changizi, Aaron Ward, and W. Darlene Reid. MRI-based Three dimensional shape analysis of thigh muscles: people with Chronic Obstructive Pulmonary Disease versus healthy older adults. In Heart+Lung Health Fest, pages 1, 2011. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = hlf2011]


  14. Hengameh Mirzaalian, Ghassan Hamarneh, Bahareh HajGhanbari, and W. Darlene Reid. 3D Shape Analysis of the Knee Extensor and Flexor Muscles in Patients with COPD using Mesh Projection-based Features. In Medical Image Computing and Computer-Assisted Intervention Workshop on Mesh Processing in Medical Image Analysis (MICCAI MeshMed), pages 1-8, 2011. Keyword(s): Medial-based Shape Representation, Shape Modelling and Analysis. [bibtex-key = miccai_meshmed2011]


  15. Manku Rana, Ghassan Hamarneh, and James Wakeling. Automated methods for determination of 3D muscle fascicle orientation in human muscle using free hand ultrasound. In American Society of Biomechanics (ASB), 2011. Keyword(s): Shape Modelling and Analysis, Tracking. [bibtex-key = asb2011]


  16. Andrea Tagliasacchi, Matt Olson, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. In Symposium on Geometry Processing (SGP) (also appears in the Special Issue of the Journal Computer Graphics Forum), pages 1563-1571, 2011. Keyword(s): Deformable Models, Shape Modelling and Analysis. [bibtex-key = sgp2011]


  17. Oliver van Kaick, Andrea Tagliasacchi, Oana Sidi, Hao (Richard) Zhang, Daniel Cohen-Or, Lior Wolf, and Ghassan Hamarneh. Prior Knowledge for Part Correspondence. In Eurographics (also appears in the Special Issue of the Journal Computer Graphics Forum), pages 1-10, 2011. Keyword(s): Segmentation, Registration and Matching, Shape Modelling and Analysis. [bibtex-key = eg2011]


  18. Neda Changizi and Ghassan Hamarneh. Probabilistic Multi-Shape Representation using an Isometric Log-Ratio Mapping. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 563-570, 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = miccai2010a]


  19. Neda Changizi and Ghassan Hamarneh. Probabilistic multi-label representation for anatomical statistical shape analysis. In SFU Exchange, 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_exchange2010b]


  20. Neda Changizi, Ghassan Hamarneh, Omer Ishaq, Aaron Ward, and Roger Tam. Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum using Template-Driven Segmentation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 17-24, 2010. Keyword(s): Registration and Matching, Segmentation, Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = miccai2010c]


  21. Manku Rana, Ghassan Hamarneh, and James Wakeling. In- vivo determination of 3D muscle architecture of the human triceps muscle using free hand ultrasound. In Society of Integrative and Comparative Biology (SICB), 2010. Keyword(s): Shape Modelling and Analysis, Tracking. [bibtex-key = sicb2010]


  22. Oliver van Kaick, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. A Survey on Shape Correspondence. In EuroGraphics: State-of-the-Art Report, pages 61-82, 2010. Keyword(s): Survey/Review, Registration and Matching, Shape Modelling and Analysis. [bibtex-key = eg2010]


  23. Ghassan Hamarneh and Neda Changizi. Barycentric Label Space. In Medical Image Computing and Computer-Assisted Intervention Workshop on Probabilistic Models for Medical Image Analysis (MICCAI PMMIA), pages 162-173, 2009. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = miccai_pmmia2009]


  24. Manku Rana, Ghassan Hamarneh, and James Wakeling. In- vivo determination of 3D muscle architecture of the human triceps surfae using free hand ultrasound. In Canadian Student Conference in Biomedical Computing (CSCBC), 2009. Keyword(s): Shape Modelling and Analysis, Tracking. [bibtex-key = cscbc2010]


  25. Ghassan Hamarneh, Preet Jassi, and Lisa Y. W. Tang. Simulation of Ground-Truth Validation Data via Physically- and Statistically-based Warps. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 5241, pages 459-467, 2008. Keyword(s): Registration and Matching, Segmentation, Shape Modelling and Analysis, Software and Tools, Validation, Synthesis/Simulation/Augmentation, Physical Modelling. [bibtex-key = miccai2008b]


  26. Manku Rana, Ghassan Hamarneh, and James Wakeling. Automated tracking of muscle fascicle orientation in B-mode ultrasound images. In North American Congress on Biomechanics (NACB), 2008. Keyword(s): Shape Modelling and Analysis, Tracking. [bibtex-key = nacb2008]


  27. Ghassan Hamarneh, Aaron Ward, and Richard Frank. Quantification and Visualization of Localized and Intuitive Shape Variability using a Novel Medial-Based Shape Representation. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 1232-1235, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = isbi2007a]


  28. Ghassan Hamarneh, Aaron Ward, Chris McIntosh, Ben Smith, Lisa Y. W. Tang, Ahmed Saad, Yonas Weldeselassie, and Omer Ishaq. Medical Image Analysis. In TechMed, Vancouver, May 16, 2007. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Imaging, Software and Tools. [bibtex-key = techmed2007]


  29. Omer Ishaq, Ghassan Hamarneh, Roger Tam, and Anthony Traboulsee. Longitudinal, Regional and Deformation-Specific Corpus Callosum Shape Analysis for Multiple Sclerosis. In IEEE Engineering in Medicine and Biology (IEEE EMBC), pages 2110-2113, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Multiple Sclerosis, MRI. [bibtex-key = embc2007]


  30. Aaron Ward and Ghassan Hamarneh. 3D Surface Parameterization Using Manifold Learning for Medial Shape Representation. In SPIE Medical Imaging, volume 6512-0X, pages 1-8, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = spiemi2007d]


  31. Aaron Ward and Ghassan Hamarneh. Statistical Shape Modeling using MDL Incorporating Shape, Appearance, and Expert Knowledge. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4791, pages 278-285, 2007. Keyword(s): Shape Modelling and Analysis, Registration and Matching. [bibtex-key = miccai2007d]


  32. Aaron Ward, Ghassan Hamarneh, and Mark Schweitzer. Anatomical Shape Analysis: Exploring the Relationship between Shape and Pathology. In CIHR National Research Poster Competition, Canadian Student Health Research Forum (CSHRF), Winnipeg, June 6-7, 2007. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = cshrf2007]


  33. Omer Ishaq, Ghassan Hamarneh, Roger Tam, and Anthony Traboulsee. Effects of Mid Sagittal Plane Perturbation and Image Interpolation on Corpus Callosum Area Calculation. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 197-202, 2006. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = isspit2006c]


  34. Omer Ishaq, Ghassan Hamarneh, Roger Tam, Anthony Traboulsee, and David Li. Effects of mid sagittal plane selection on corpus callosal area. In 22nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRMS) (Also appeared in Multiple Sclerosis Journal 12(1):S173, 2006), pages 616, 2006. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = ectrms2006]


  35. Chris McIntosh and Ghassan Hamarneh. Genetic algorithm driven statistically deformed models for medical image segmentation. In ACM Workshop on Medical Applications of Genetic and Evolutionary Computation Workshop, in conjunction with the Genetic and Evolutionary Computation Conference (ACM GECCO MedGEC), pages 8 pages, 2006. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life. [bibtex-key = medgec2006]


  36. Aaron Ward, Ghassan Hamarneh, Reem Ashry, and Mark Schweitzer. 3D Shape Analysis of the Supraspinatus Muscle. In Medical Image Computing and Computer-Assisted Intervention Joint Diseases Workshop (MICCAI JD), pages 96-103, 2006. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = miccai_jd2006b]


  37. Aaron Ward, Ghassan Hamarneh, and Mark Schweitzer. 3D Shape Description of the Bicipital Groove: Correlation to Pathology. In Medical Image Computing and Computer-Assisted Intervention Joint Diseases Workshop (MICCAI JD), pages 80-87, 2006. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = miccai_jd2006a]


  38. Aaron Ward, Mark Schweitzer, and Ghassan Hamarneh. 3D shape description of the bicipital groove of the proximal humerus. In SPIE Medical Imaging, volume 6143-27, pages 1-9, 2006. Keyword(s): Shape Modelling and Analysis. [bibtex-key = spiemi2006b]


  39. Aaron Ward, Mark Schweitzer, and Ghassan Hamarneh. Computational and Visualization Techniques for Understanding the Shape Variations of the Bicipital Groove of the Proximal Humerus. In Annual meeting of the Society for Computer Applications in Radiology (SCAR), pages 47-49, 2006. Keyword(s): Visualization, Shape Modelling and Analysis. [bibtex-key = scar2006a]


  40. Ghassan Hamarneh, Vincent Chu, Marcelo Bordalo-Rodrigues, and Mark Schweitzer. Deformation analysis of Hoffa's fat pad from CT images of knee flexion and extension. In SPIE Medical Imaging, volume 5746, pages 527-534, 2005. Keyword(s): Segmentation, Registration and Matching, Shape Modelling and Analysis. [bibtex-key = spiemi2005b]


  41. Ghassan Hamarneh and Chris McIntosh. Physics-based deformable organisms for medical image analysis. In SPIE Medical Imaging, volume 5747, pages 326-335, 2005. Keyword(s): Segmentation, Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Organisms, Artificial Life. [bibtex-key = spiemi2005a]


  42. Xiaoxing Li and Ghassan Hamarneh. Modeling Prior Shape and Appearance Knowledge in Watershed Segmentation. In Canadian Conference on Computer and Robot Vision (CRV), pages 27-33, 2005. Keyword(s): Segmentation, Shape Modelling and Analysis. [bibtex-key = crv2005]


  43. Aaron Ward, Mark Schweitzer, and Ghassan Hamarneh. Shape Description of the Bicipital Groove of the Proximal Humerus. In 1st Annual Medical Technology Research Showcase, Vancouver, BC, 2005. Keyword(s): Shape Modelling and Analysis. [bibtex-key = medical_showcase2005b]


  44. Ghassan Hamarneh, Josette Chen, Nir Lifshitz, and Mark Henkelman. Local volume changes of the corpus callosum from 3D MR images of wildtype and knockout mouse brains. In 11th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), 2003. Keyword(s): Registration and Matching, Shape Modelling and Analysis. [bibtex-key = ismrm2003b]


  45. Ghassan Hamarneh and Tim McInerney. Physics-based shape deformations for medical image analysis. In SPIE Electronic Imaging, volume 5014, pages 354-362, 2003. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = spieei2003]


  46. Ghassan Hamarneh. [Time Varying Shape, Spatio-Temporal Models] Deformable Spatio-Temporal Shape Models. In R Fisher, editor, In CVonline: On-Line Compendium of Computer Vision [Online], 2002. Note: Available: http://www.dai.ed.ac.uk/CVonline/. [2002, January, 22nd]. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = cvonline2002]


  47. Ghassan Hamarneh and Tomas Gustavsson. Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. In British Machine Vision Conference (BMVC), volume 1, pages 13-22, 2001. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = bmvc2001]


  48. Ghassan Hamarneh and Tim McInerney. Controlled Shape Deformations via Medial Profiles. In Vision Interface (VI), pages 252-258, 2001. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = vi2001]


  49. Ghassan Hamarneh. Image Segmentation with Constrained Snakes. In Swedish Image Analysis Society Newsletter SSABlaskan, number 8, pages 5-6, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssablaskan2000]


  50. Ghassan Hamarneh and Tomas Gustavsson. Combining Snakes and Active Shape Models for Segmenting the Human Left Ventricle in Echocardiographic Images. In IEEE Computers in Cardiology (IEEE CinC), volume 27, pages 115-118, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = cinc2000b]


  51. Ghassan Hamarneh and Tomas Gustavsson. Constraining Contour Deformations Using Statistical a Priori Knowledge of Shape without Requiring Point-to-Point Correspondence. In Swedish Symposium on Image Analysis (SSIA), pages 33-36, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab2000a]


  52. Ghassan Hamarneh and Tomas Gustavsson. Statistically Constrained Snake Deformations. In IEEE International Conference on Systems, Man, and Cybernetics (IEEE SMC), volume 3, pages 1610-1615, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = smc2000b]


  53. Ghassan Hamarneh and Tomas Gustavsson. A Method for Modeling and Segmentation of Spatio-Temporal Shapes. In Swedish Symposium on Image Analysis (SSIA), pages 49-52, 1999. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1999]


  54. Rafeef Abugharbieh, Ghassan Hamarneh, and Tomas Gustavsson. Review - Active Shape Models - Part II: Image Search and Classification. In Swedish Symposium on Image Analysis (SSIA), pages 129-132, 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1998b]


  55. Ghassan Hamarneh, Rafeef Abugharbieh, and Tomas Gustavsson. Review - Active Shape Models - Part I: Modeling Shape and Gray Level Variation. In Swedish Symposium on Image Analysis (SSIA), pages 125-128, 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1998a]


Internal reports
  1. Neda Changizi and Ghassan Hamarneh. Probabilistic Multi-Shape Representation using an Isometric Log-Ratio Mapping. Technical report TR 2010-05, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 4 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_cs2010_05]


  2. Ghassan Hamarneh and Neda Changizi. Barycentric Label Space. Technical report TR 2009-13, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 4 2009. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_cs2009_13]


  3. Aaron Ward and Ghassan Hamarneh. GMAT: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Intelligent Pruning. Technical report TR 2008-07, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 3 2008. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = sfu_cs2008_07]


  4. Ghassan Hamarneh and Tim McInerney. Physics-Based Shape Deformations for Medical Image Analysis. Technical report CSRG-436, Department of Computer Science, University of Toronto, Toronto, ON, Canada, 2001. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = csrg2001_436]


  5. Ghassan Hamarneh. Active Shape Models, Modeling Shape Variations and Gray Level Information and an Application to Image Search and Classification. Technical report R005/1998 (S2-IAG-98-1), Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, Goteborg, Sweden, 9 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = s2iag1998_1]



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