1. Omer Ishaq. Algorithms for Image Analysis of Corpus Callosum Degeneration for Multiple Sclerosis. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, January 2008. [bibtex-key = msc2008ishaq]

1. Chloe Lim, Hayyan Liaqat, William Siu, Ghassan Hamarneh, and George Medvedev. Future implementation of automated analysis tools for Multiple Sclerosis on conventional magnetic resonance imaging (Lim and Liaqat: Joint first authors; Hamarneh and Medvedev: Joint senior authors). Multiple Sclerosis. MSVirtual 2020 – Late Breaking News. Also appears in ACTRIMS-ECTRMS meeting, 1(3 SUPPL):99, 2020. Keyword(s): Segmentation, Software and Tools, Multiple Sclerosis, MRI. [bibtex-key = msj2020]



2. Omer Ishaq, Ghassan Hamarneh, Roger Tam, Anthony Traboulsee, and David Li. Effects of mid sagittal plane selection on corpus callosal area. Multiple Sclerosis (special supplementary journal issue of all oral presentations in the 22nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRMS) 2006). Also appeared in ECTRMS 2006, 12(1):S173, 2006. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = msj2006]

1. Shahab Aslani, Vittorio Murino, Michael Dayan, Roger Tam, Diego Sona, and Ghassan Hamarneh. Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 781-785, 2020. Keyword(s): Segmentation, Machine Learning, Deep Learning, Multiple Sclerosis, MRI. [bibtex-key = isbi2020]



2. Chloe Lim, Hayyan Liaqat, William Siu, Ghassan Hamarneh, and George Medvedev. Future implementation of automated analysis tools for Multiple Sclerosis on conventional magnetic resonance imaging (Lim and Liaqat: Joint first authors; Hamarneh and Medvedev: Joint senior authors). In 8th joint Americas Committee for Treatment and Research in Multiple Sclerosis - European Committee for Treatment and Research in Multiple Sclerosis (joint ACTRIMS-ECTRMS), pages 1, 2020. Keyword(s): Segmentation, Software and Tools, Multiple Sclerosis, MRI. [bibtex-key = ectrms2020]



3. Lisa Y. W. Tang, Ghassan Hamarneh, Anthony Traboulsee, and Roger Tam. Corpus callosum segmentation in MS studies using normal atlases and optimal hybridization of extrinsic and intrinsic image cues. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 9351, pages 123-131, 2015. Keyword(s): Registration and Matching, Segmentation, Multiple Sclerosis, MRI. [bibtex-key = miccai2015c]



4. Jeremy Kawahara, Chris McIntosh, Roger Tam, and Ghassan Hamarneh. Augmenting Auto-context with Global Geometric Features for Spinal Cord Segmentation. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 8184, pages 212-219, 2013. Keyword(s): Segmentation, Machine Learning, Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = miccai_mlmi2013a]



5. Jeremy Kawahara, Chris McIntosh, Roger Tam, and Ghassan Hamarneh. Globally Optimal Spinal Cord Segmentation using A Minimal Path in High Dimensions. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 836-839, 2013. Keyword(s): Segmentation, Optimization, Anatomical Trees and Tubular Structures, Graph based, Multiple Sclerosis, MRI. [bibtex-key = isbi2013b]



6. Jeremy Kawahara, Chris McIntosh, Roger Tam, and Ghassan Hamarneh. Novel Morphological and Appearance Features for Predicting Physical Disability from MR Images in Multiple Sclerosis Patients. In Medical Image Computing and Computer-Assisted Intervention Workshop on Computational Methods and Clinical Applications for Spine Imaging (MICCAI CSI), pages 1-13, 2013. Keyword(s): Machine Learning, Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = miccai_csi2013]



7. Fahime Sheikhzadeh, Roger Tam, and Ghassan Hamarneh. Spatial Distribution of Lesions as a Surrogate Biomarker for Disability in Multiple Sclerosis. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 273-278, 2012. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = mmbia2012e]



8. Chris McIntosh, Ghassan Hamarneh, Matt Toom, and Roger Tam. Spinal Cord Segmentation for Volume Estimation in Healthy and Multiple Sclerosis Subjects using Crawlers and Minimal Paths. In IEEE Conference on Healthcare Informatics, Imaging and Systems Biology (IEEE HISB), pages 25-31, 2011. Keyword(s): Artificial Life, Deformable Organisms, Segmentation, Anatomical Trees and Tubular Structures, Multiple Sclerosis, MRI. [bibtex-key = hisb2011b]



9. Neda Changizi, Ghassan Hamarneh, Omer Ishaq, Aaron Ward, and Roger Tam. Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum using Template-Driven Segmentation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 17-24, 2010. Keyword(s): Registration and Matching, Segmentation, Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = miccai2010c]



10. Omer Ishaq, Ghassan Hamarneh, Roger Tam, and Anthony Traboulsee. Longitudinal, Regional and Deformation-Specific Corpus Callosum Shape Analysis for Multiple Sclerosis. In IEEE Engineering in Medicine and Biology (IEEE EMBC), pages 2110-2113, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Multiple Sclerosis, MRI. [bibtex-key = embc2007]



11. Omer Ishaq, Ghassan Hamarneh, Roger Tam, and Anthony Traboulsee. Effects of Mid Sagittal Plane Perturbation and Image Interpolation on Corpus Callosum Area Calculation. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 197-202, 2006. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = isspit2006c]



12. Omer Ishaq, Ghassan Hamarneh, Roger Tam, Anthony Traboulsee, and David Li. Effects of mid sagittal plane selection on corpus callosal area. In 22nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRMS) (Also appeared in Multiple Sclerosis Journal 12(1):S173, 2006), pages 616, 2006. Keyword(s): Shape Modelling and Analysis, Multiple Sclerosis, MRI. [bibtex-key = ectrms2006]

1. Shahab Aslani, Vittorio Murino, Michael Dayan, Roger Tam, Diego Sona, and Ghassan Hamarneh. Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. Technical report arxiv:1910.10035, 10 2019. Keyword(s): Segmentation, Machine Learning, Deep Learning, Multiple Sclerosis, MRI. [bibtex-key = arxiv:1910.10035]

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