1. Mayur Mallya. Multimodal Guidance for Medical Image Classification. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, August 2022. [bibtex-key = msc2022mallya]

1. Weina Jin, Xiaoxiao Li, Mostafa Fatehi, and Ghassan Hamarneh. Generating Post-Hoc Explanation from Deep Neural Networks for Multi-Modal Medical Image Analysis Tasks. MethodX, 10(102009):1-7, 2023. Keyword(s): Deep Learning, Explainable AI (XAI), Multimodal, Software and Tools. [bibtex-key = methodx2023]



2. Weina Jin, Xiaoxiao Li, Mostafa Fatehi, and Ghassan Hamarneh. Guidelines and evaluation for clinical explainable AI in medical image analysis. Medical Image Analysis (MedIA), 102684:1-30, 2022. Keyword(s): Deep Learning, Explainable AI (XAI), Multimodal. [bibtex-key = media2022b]



3. Jeremy Kawahara, Sara Daneshvar, Giuseppe Argenziano, and Ghassan Hamarneh. Seven-Point Checklist and Skin Lesion Classification using Multi-Task Multi-Modal Neural Net. IEEE Journal of Biomedical and Health Informatics (IEEE JBHI) (Special Issue on Skin Lesion Image Analysis for Melanoma Detection), 23(2):538-546, 2019. Keyword(s): Color/Multichannel/Vector-valued, Deep Learning, Dermatology, Classification, Multimodal, Datasets. [bibtex-key = jbhi2019a]



4. Anmol Sharma and Ghassan Hamarneh. Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network. IEEE Transactions on Medical Imaging (IEEE TMI), 39(4):1170-1183, 2019. Keyword(s): Machine Learning, Deep Learning, Generative Adversarial Network, Synthesis/Simulation/Augmentation, Multimodal. [bibtex-key = tmi2019]



5. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. Journal of Digital Imaging, 23(3):258-267, 2010. Keyword(s): Imaging, Registration and Matching, Validation, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = jdi2010]



6. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Validation of Mutual Information-Based Registration of CT and Bone SPECT Images in Dual-isotope Studies. Computer Methods and Programs in Biomedicine, 92(2):173-185, 2008. Keyword(s): Imaging, Registration and Matching, Validation, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = cmpb2008]

1. Weina Jin, Xiaoxiao Li, and Ghassan Hamarneh. Evaluating Explainable AI on Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements?. In Association for the Advancement of Artificial Intelligence Conference (AAAI), volume 36, pages 11945-11953, 2022. Keyword(s): Deep Learning, Explainable AI (XAI), Glioma Imaging, Machine Learning, MRI, Multimodal. [bibtex-key = aaai2022]



2. Mayur Mallya and Ghassan Hamarneh. Deep Multimodal Guidance for Medical Image Classification. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 13437, pages 298–308, 2022. Keyword(s): Dermatology, Deep Learning, MRI, Microscopy, Multimodal. [bibtex-key = miccai2022]



3. Weina Jin, Xiaoxiao Li, and Ghassan Hamarneh. One Map Does Not Fit All: Evaluating Saliency Map Explanation on Multi-Modal Medical Images. In International Conference on Machine Learning (ICML) workshop on Interpretable Machine Learning in Healthcare (IMLH), pages 1-13, 2021. Keyword(s): Deep Learning, Explainable AI (XAI), Glioma Imaging, Multimodal. [bibtex-key = icml_imlh2021]



4. Ghassan Hamarneh, Alborz Amir-Khalili, Masoud Nosrati, Ivan Figueroa, Jeremy Kawahara, Osama Al-Alao, Jean-Marc Peyrat, Julien Abi-Nahed, Abdulla Al-Ansari, and Rafeef Abugharbieh. Towards Multi-Modal Image-Guided Tumour Identification in Robot-Assisted Partial Nephrectomy. In IEEE Middle East Conference on Biomedical Engineering (IEEE MECBME), pages 159-162, 2014. Keyword(s): Image-Guided Surgery, Segmentation, Registration and Matching, Physical Modelling, Multimodal. [bibtex-key = mecbme2014]



5. Lingshu Yin, Lisa Y. W. Tang, Ghassan Hamarneh, Anna Celler, Sergey Shcherbinin, Tsien-Fei Fua, Hannah Carolan, Anna Thompson, Mitchell Liu, Cheryl Duzenli, Brad Gill, Finbar Sheehan, John Powe, Daniel Worsley, and Vitali Moiseenko. Evaluating geometrical accuracy of image registration methods in SPECT guided radiation therapy. In Medical Image Computing and Computer-Assisted Intervention Workshop on Geometric accuracy in image guided intervention (MICCAI GAIGI), pages 63-70, 2009. Keyword(s): Registration and Matching, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = miccai_gaigi2009]



6. Lingshu Yin, Lisa Y. W. Tang, Ghassan Hamarneh, Vitali Moiseenko, Anna Celler, Sergey Shcherbinin, Tsien-Fei Fua, Anna Thompson, Mitchell Liu, Cheryl Duzenli, Brad Gill, Finbar Sheehan, John Powe, and Daniel Worsley. Quantitative evaluation on the accuracy of image registration methods in SPECT guided radiation therapy for lung cancer patients. In Canadian Organization of Medical Physicists 55th Annual Scientific Meeting (COMP), 2009. Keyword(s): Functional/Molecular/Dynamic Imaging, Registration and Matching, Multimodal. [bibtex-key = comp2009]



7. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Increasing Accuracy of Mutual Information-Based Registration of Tumor SPECT and CT Images with Dual-isotope Studies. In Society for Imaging Informatics in Medicine Annual Meeting (SIIM), pages 59-61, 2008. Keyword(s): Registration and Matching, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = siim2008]



8. Anna Celler, Lisa Y. W. Tang, Ghassan Hamarneh, and Philip Cohen. Co-registration of CT-SPECT images for tumor localization and dosimetry. In European Association of Nuclear Medicine Annual Congress (EANM), pages 260, 2006. Keyword(s): Registration and Matching, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = eanm2006]



9. Lisa Y. W. Tang, Anna Celler, and Ghassan Hamarneh. Co-registration and fusion of CT and SPECT images. In Annual meeting of the Canadian Society of Nuclear Medicine (CSNM), 2006. Keyword(s): Registration and Matching, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = csnm2006b]



10. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Co-registration and fusion of CT and SPECT images using mutual information. In Vancouver Coastal Health Research Institute (VCHRI), 2006. Keyword(s): Registration and Matching, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = vchri2006b]



11. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Co-registration of Bone CT and SPECT Images Using Mutual Information. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 116-121, 2006. Keyword(s): Registration and Matching, Multimodal, Functional/Molecular/Dynamic Imaging. [bibtex-key = isspit2006d]

1. Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, and Ghassan Hamarneh. Invisible Users: Uncovering End-Users' Requirements for Explainable AI via Explanation Forms and Goals. Technical report arxiv.2302.06609, 2 2023. Keyword(s): Deep Learning, Explainable AI (XAI), Multimodal, Software and Tools. [bibtex-key = arxiv:2302.06609]



2. Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Xiaoxiao Li, and Ghassan Hamarneh. Transcending XAI Algorithm Boundaries through End-User-Inspired Design. Technical report arXiv:2208.08739, 8 2022. Keyword(s): Deep Learning, Explainable AI (XAI), Multimodal. [bibtex-key = arxiv:2208.08739]



3. Weina Jin, Mostafa Fatehi, Ru Guo, and Ghassan Hamarneh. Evaluating the Clinical Utility of Artificial Intelligence Assistance and its Explanation on Glioma Grading Task. Technical report medRxiv 2022.12.07.22282726, December 2022. Keyword(s): Deep Learning, Explainable AI (XAI), Multimodal. [bibtex-key = medrxiv2022_22282726]



4. Weina Jin, Xiaoxiao Li, and Ghassan Hamarneh. Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements?. Technical report arXiv:2203.06487, 3 2022. Keyword(s): Deep Learning, Explainable AI (XAI), Multimodal. [bibtex-key = arxiv:2203.06487]



5. Mayur Mallya and Ghassan Hamarneh. Deep Multimodal Guidance for Medical Image Classification. Technical report arXiv:2203.05683, 3 2022. Keyword(s): Dermatology, Deep Learning, MRI, Microscopy, Multimodal. [bibtex-key = arxiv:2203.05683]



6. Anmol Sharma and Ghassan Hamarneh. Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network. Technical report arxiv:1904.12200, 4 2019. Keyword(s): Glioma Imaging, Machine Learning, Deep Learning, Generative Adversarial Network, Multimodal. [bibtex-key = arxiv:1904.12200]

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