1. Aaron Ward and Ghassan Hamarneh. GMAT: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Intelligent Pruning. IEEE Transactions Pattern Analysis and Machine Intelligence (IEEE TPAMI), 32(6):1084-1096, 2010. Keyword(s): Medial-based Shape Representation, Shape Modelling and Analysis, Registration and Matching. [bibtex-key = pami2010]



2. Ghassan Hamarneh, Rafeef Abugharbieh, and Tim McInerney. Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation.. International Journal of Shape Modeling (IJSM), 10(2):187-209, 2004. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Medial-based Shape Representation. [bibtex-key = ijsm2004]

1. Hengameh Mirzaalian, Ghassan Hamarneh, Bahareh HajGhanbari, and W. Darlene Reid. 3D Shape Analysis of the Knee Extensor and Flexor Muscles in Patients with COPD using Mesh Projection-based Features. In Medical Image Computing and Computer-Assisted Intervention Workshop on Mesh Processing in Medical Image Analysis (MICCAI MeshMed), pages 1-8, 2011. Keyword(s): Medial-based Shape Representation, Shape Modelling and Analysis. [bibtex-key = miccai_meshmed2011]



2. Ghassan Hamarneh, Aaron Ward, and Richard Frank. Quantification and Visualization of Localized and Intuitive Shape Variability using a Novel Medial-Based Shape Representation. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 1232-1235, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = isbi2007a]



3. Omer Ishaq, Ghassan Hamarneh, Roger Tam, and Anthony Traboulsee. Longitudinal, Regional and Deformation-Specific Corpus Callosum Shape Analysis for Multiple Sclerosis. In IEEE Engineering in Medicine and Biology (IEEE EMBC), pages 2110-2113, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Multiple Sclerosis, MRI. [bibtex-key = embc2007]



4. Aaron Ward and Ghassan Hamarneh. 3D Surface Parameterization Using Manifold Learning for Medial Shape Representation. In SPIE Medical Imaging, volume 6512-0X, pages 1-8, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = spiemi2007d]



5. Ghassan Hamarneh and Chris McIntosh. Physics-based deformable organisms for medical image analysis. In SPIE Medical Imaging, volume 5747, pages 326-335, 2005. Keyword(s): Segmentation, Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Organisms, Artificial Life. [bibtex-key = spiemi2005a]



6. Ghassan Hamarneh and Tim McInerney. Physics-based shape deformations for medical image analysis. In SPIE Electronic Imaging, volume 5014, pages 354-362, 2003. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = spieei2003]



7. Ghassan Hamarneh and Tim McInerney. Controlled Shape Deformations via Medial Profiles. In Vision Interface (VI), pages 252-258, 2001. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = vi2001]

1. Ryan Dickie, Ghassan Hamarneh, and Rafeef Abugharbieh. Live-vessel: Interactive vascular image segmentation with simultaneous extraction of optimal medial and boundary paths. Technical report TR 2009-23, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 11 2009. Keyword(s): Segmentation, Anatomical Trees and Tubular Structures, Color/Multichannel/Vector-valued, Optimization, Software and Tools, User Interaction, Medial-based Shape Representation, Graph based, Bifurcation/Junction. [bibtex-key = sfu_cs2009_23]



2. Aaron Ward and Ghassan Hamarneh. GMAT: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Intelligent Pruning. Technical report TR 2008-07, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 3 2008. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = sfu_cs2008_07]



3. Ghassan Hamarneh and Tim McInerney. Physics-Based Shape Deformations for Medical Image Analysis. Technical report CSRG-436, Department of Computer Science, University of Toronto, Toronto, ON, Canada, 2001. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = csrg2001_436]

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