1. Chris McIntosh and Ghassan Hamarneh. Medial-based Deformable Models in Non-convex Shape-spaces for Medical Image Segmentation using Genetic Algorithms. IEEE Transactions on Medical Imaging (IEEE TMI), 31(1):33-50, 2012. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life, Optimization, Genetics and Spatial -Omics. [bibtex-key = tmi2012a]



2. Chris McIntosh and Ghassan Hamarneh. Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial based Shape Deformation (Chapter 4.1). Genetic and Evolutionary Computation: Medical Applications, pp 47-67, 2009. ISBN: 978-0-470-74813-8. Keyword(s): Segmentation, Deformable Models, Artificial Life, Genetics and Spatial -Omics. [bibtex-key = gecma2009]

1. Arafat Hussain, Ghassan Hamarneh, and Rafeef Abugharbieh. ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 11769, pages 130-138, 2019. Keyword(s): Classification, Machine Learning, Deep Learning, Genetics and Spatial -Omics. [bibtex-key = miccai2019e]



2. Mengliu Zhao and Ghassan Hamarneh. Bifurcation Localization in 3D Images via Evolutionary Geometric Deformable Templates. In Canadian Conference on Computer and Robot Vision (CRV), pages 124-130, 2017. Keyword(s): Anatomical Trees and Tubular Structures, Deformable Models, Shape Modelling and Analysis, Bifurcation/Junction, Genetics and Spatial -Omics. [bibtex-key = crv2017a]



3. Masoud Nosrati and Ghassan Hamarneh. Segmentation of Cells with Partial Occlusion and Part Configuration Constraint using Evolutionary Computation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 8149, pages 461-468, 2013. Keyword(s): Optimization, Segmentation, Genetics and Spatial -Omics. [bibtex-key = miccai2013c]



4. Chris McIntosh and Ghassan Hamarneh. Genetic algorithm driven statistically deformed models for medical image segmentation. In ACM Workshop on Medical Applications of Genetic and Evolutionary Computation Workshop, in conjunction with the Genetic and Evolutionary Computation Conference (ACM GECCO MedGEC), pages 8 pages, 2006. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life, Genetics and Spatial -Omics. [bibtex-key = medgec2006]

1. Ismail M. Khater, Ivan Robert Nabi, and Ghassan Hamarneh. HDCluster: High-Degree Graph Clustering for Robust Analysis of Single Molecule Localization Microscopy. Technical report biorxiv:2025.10.23.684134v1, Simon Fraser Universiry, 10 2025. Keyword(s): Super Resolution Microscopy, Single Molecule Localization Microscopy, Clustering, Point Cloud, Point Cloud, Genetics and Spatial -Omics. [bibtex-key = biorxiv_2025_10_23_684134]

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