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Publications about 'Deep Learning'
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Hanene Ben Yedder.
Deep Learning Methods for Reconstruction and Analysis of Diffuse Optical Tomography Images of Breast Cancer Lesions.
Doctoral Thesis,
School of Computing Science, Faculty of Applied Sciences, Simon Fraser University,
September 2023.
[bibtex-key = phd2023benyedder]
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Saeed Izadi.
Deep Learning for Medical Image Restoration.
Doctoral Thesis,
School of Computing Science, Faculty of Applied Sciences, Simon Fraser University,
June 2022.
[bibtex-key = phd2022izadi]
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Zahra Mirikharaji.
Deep Learning for Skin Lesion Segmentation.
Doctoral Thesis,
School of Computing Science, Faculty of Applied Sciences, Simon Fraser University,
April 2022.
[bibtex-key = phd2022mirikharaji]
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Saeedeh Afshari.
Deep Learning for Quantitative Image Analysis of Positron Emission Tomography.
Master's Thesis,
School of Computing Science, Faculty of Applied Sciences, Simon Fraser University,
March 2019.
[bibtex-key = msc2019afshari]
Articles in journal, book chapters
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Kumar Abhishek,
Colin J. Brown,
and Ghassan Hamarneh.
Multi-Sample $\zeta$-mixup: Richer, More Realistic Synthetic Samples from a $p$-Series Interpolant.
Journal of Big Data,
11(43):1-41,
3 2024.
Keyword(s): Machine Learning,
Deep Learning,
Synthesis/Simulation/Augmentation,
Classification,
Dermatology.
[bibtex-key = jbd2024]
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Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
GC2: Generalizable Continual Classification of Medical Images.
IEEE Transactions on Medical Imaging (IEEE TMI),
000(000):000-000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Continual Learning,
Domain Generalization.
[bibtex-key = tmi2024]
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Saeed Izadi,
Isaac Shiri,
Carlos Uribe,
Parham Geramifar,
Habib Zaidi,
Arman Rahmim,
and Ghassan Hamarneh.
Enhanced Direct Joint Attenuation and Scatter Correction of Whole-Body PET Images via Context-Aware Deep Networks.
Zeitschrift fuer Medizinische Physik,
000(000):000-000,
2024.
Keyword(s): Enhancement/Restoration/Denoising,
Deep Learning,
Functional/Molecular/Dynamic Imaging.
[bibtex-key = zmedphys2024]
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Ivan Robert Nabi,
Ben Cardoen,
Khater,
Guang Gao,
Timothy H. Wong,
and Ghassan Hamarneh.
AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth.
The Journal Of Cell Biology (JCB),
000(jcb.000):000-000,
000 2024.
Keyword(s): Super Resolution Microscopy,
Deep Learning,
Machine Learning,
Weak Supervision,
Survey/Review.
[bibtex-key = jcb2024]
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Ashish Sinha,
Jeremy Kawahara,
Arezou Pakzad,
Kumar Abhishek,
Matthieu Ruthven,
Enjie Ghorbel,
Anis Kacem,
Djamila Aouada,
and Ghassan Hamarneh.
DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images (Sinha, Kawahara, Pakzad: Joint first authors).
Medical Image Analysis (MedIA),
000(103145):000,
2024.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Segmentation,
Synthesis/Simulation/Augmentation,
Datasets.
[bibtex-key = media2024]
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Hanene Ben Yedder,
Ben Cardoen,
Majid Shokoufi,
Farid Golnaraghi,
and Ghassan Hamarneh.
Deep Orthogonal Multi-Wavelength Fusion for Tomogram-Free Diagnosis in Diffuse Optical Imaging.
Computers in Biology and Medicine (CIBM),
000:000,
2024.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning.
[bibtex-key = cibm2024]
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Saurabh Garg,
Haoyao Ruan,
Ghassan Hamarneh,
Dawn M. Behne,
Allard Jongman,
Joan Sereno,
and Yue Wang.
Mouth2Audio: Intelligible Audio Synthesis From Videos With Distinctive Vowel Articulation.
International Journal of Speech Technology,
000(000):000-000,
2023.
Keyword(s): Synthesis/Simulation/Augmentation,
Tracking,
Machine Learning,
Deep Learning,
Color/Multichannel/Vector-valued,
Speech and Language,
Facial Analysis,
Spatio-Temporal.
[bibtex-key = ijst2023b]
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Weina Jin,
Mostafa Fatehi,
Ru Guo,
and Ghassan Hamarneh.
Evaluating the Clinical Utility of Artificial Intelligence Assistance and its Explanation on the Glioma Grading Task (Jin and Fatehi: Joint first authors).
Artificial Intelligence In Medicine,
000(000):000-000,
2023.
Keyword(s): Deep Learning,
Explainable AI (XAI).
[bibtex-key = aiim2023]
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Weina Jin,
Xiaoxiao Li,
Mostafa Fatehi,
and Ghassan Hamarneh.
Generating Post-Hoc Explanation from Deep Neural Networks for Multi-Modal Medical Image Analysis Tasks.
MethodX,
10(102009):1-7,
2023.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Multimodal,
Software and Tools.
[bibtex-key = methodx2023]
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Zahra Mirikharaji,
Kumar Abhishek,
Alceu Bissoto,
Catarina Barata,
Sandra Avila,
Eduardo Valle,
M. Emre Celebi,
and Ghassan Hamarneh.
A Survey on Deep Learning for Skin Lesion Segmentation (Mirikharaji and Abhishek: Joint first authors; Celebi and Hamarneh: Joint senior authors).
Medical Image Analysis (MedIA),
pp 1-55,
2023.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Survey/Review,
Dermatology.
[bibtex-key = media2023]
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Arafat Hussain,
Zahra Mirikharaji,
Mohammad Momeny,
Mahmoud Marhamati,
Ali Asghar Neshat,
Rafeef Garbi,
and Ghassan Hamarneh.
Active Deep Learning from a Noisy Teacher for Semi-supervised 3D Image Segmentation: Application to COVID-19 Pneumonia Infection in CT.
Computerized Medical Imaging and Graphics (CMIG),
102(102127):1-11,
2022.
Keyword(s): Segmentation,
Machine Learning,
Deep Learning,
COVID19,
SARS-CoV-2.
[bibtex-key = cmig2022]
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Saeed Izadi,
Darren Sutton,
and Ghassan Hamarneh.
Image Denoising in the Deep Learning Era.
Artificial Intelligence Review,
000(000):1-46,
2022.
Keyword(s): Enhancement/Restoration/Denoising,
Machine Learning,
Deep Learning,
Survey/Review.
[bibtex-key = aire2022]
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Weina Jin,
Xiaoxiao Li,
Mostafa Fatehi,
and Ghassan Hamarneh.
Guidelines and evaluation for clinical explainable AI in medical image analysis.
Medical Image Analysis (MedIA),
102684:1-30,
2022.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Multimodal.
[bibtex-key = media2022b]
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Ivan Klyuzhin,
Yixi Xu,
Anthony Ortiz,
Juan Lavista Ferres,
Ghassan Hamarneh,
and Arman Rahmim.
Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features.
Computer Methods and Programs in Biomedicine,
2019(106750):1-10,
2022.
Keyword(s): Deep Learning,
Functional/Molecular/Dynamic Imaging,
Radiomics.
[bibtex-key = cmpb2022]
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M.Sadegh Saberian,
Kathleen Moriarty,
Andrea Olmstead,
Christian Hallgrimson,
François Jean,
Ivan Robert Nabi,
Maxwell Libbrecht,
and Ghassan Hamarneh.
DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on Cell Morphology with Deep Multiple Instance Learning.
IEEE Transactions on Medical Imaging (IEEE TMI),
41(11):3128-3145,
2022.
Keyword(s): Deep Learning,
Machine Learning,
COVID19,
SARS-CoV-2.
[bibtex-key = tmi2022]
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Mengliu Zhao,
Jeremy Kawahara,
Kumar Abhishek,
Sajjad Shamanian,
and Ghassan Hamarneh.
Skin3D: Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Textured Meshes (Zhao and Kawahara: Joint first authors).
Medical Image Analysis (MedIA),
77(102329):1-10,
2022.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Optimization,
Registration and Matching,
Graph based,
Tracking,
Datasets.
[bibtex-key = media2022]
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Kumar Abhishek,
Jeremy Kawahara,
and Ghassan Hamarneh.
Predicting the Clinical Management of Skin Lesions using Deep Learning.
Nature - Scientific Reports,
11(7769):1-14,
2021.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Clinical Management.
[bibtex-key = nature_sr2021b]
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Arafat Hussain,
Ghassan Hamarneh,
and Rafeef Garbi.
Cascaded Localization Regression Neural Nets for Kidney Localization and Segmentation-free Volume Estimation.
IEEE Transactions on Medical Imaging (IEEE TMI),
40(6):1555-1567,
2021.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Localization.
[bibtex-key = tmi2021]
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Arafat Hussain,
Ghassan Hamarneh,
and Rafeef Garbi.
Learnable Image Histograms-based Deep Radiomics for Renal Cell Carcinoma Grading and Staging.
Computerized Medical Imaging and Graphics (CMIG),
90(101924):1-10,
2021.
Keyword(s): Classification,
Machine Learning,
Deep Learning.
[bibtex-key = cmig2021]
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Saeed Izadi and Ghassan Hamarneh.
AECNN: Adversarial and Enhanced Convolutional Neural Networks (Chapter 7).
Computer-Aided Analysis of Gastrointestinal Videos,
pp 59-62,
2021.
ISBN: 978-3-030-64339-3.
Keyword(s): Segmentation,
Deep Learning,
Generative Adversarial Network,
Microscopy.
[bibtex-key = caagv2021]
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Mohammad Momeny,
Ali Asghar Neshat,
Arafat Hussain,
Solmaz Kia,
Mahmoud Marhamati,
Ahmad Jahanbakhshi,
and Ghassan Hamarneh.
Learning-to-Augment Strategy using Noisy and Denoised Data: Improving Generalizability of Deep CNN for the Detection of COVID-19 in X-ray Images.
Computers in Biology and Medicine (CIBM),
136:104704,
2021.
Keyword(s): Deep Learning,
Classification,
Augmentation,
COVID19,
SARS-CoV-2.
[bibtex-key = cibm2021]
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Saeid Asgari Taghanaki,
Kumar Abhishek,
Joseph Paul Cohen,
Julien Cohen-Adad,
and Ghassan Hamarneh.
Deep Semantic Segmentation of Natural and Medical Images: A Review (Taghanaki and Abhishek: Joint first authors).
Artificial Intelligence Review,
54(1):137-178,
2021.
Keyword(s): Segmentation,
Survey/Review,
Machine Learning,
Deep Learning.
[bibtex-key = aire2020a]
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Hanene Ben Yedder,
Ben Cardoen,
and Ghassan Hamarneh.
Deep Learning for Biomedical Image Reconstruction: A Survey.
Artificial Intelligence Review,
54(1):215-251,
2021.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning.
[bibtex-key = aire2020b]
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Hanene Ben Yedder,
Ben Cardoen,
Majid Shokoufi,
Farid Golnaraghi,
and Ghassan Hamarneh.
Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography.
IEEE Transactions on Medical Imaging (IEEE TMI),
41(3):515-530,
2021.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning,
Synthesis/Simulation/Augmentation,.
[bibtex-key = tmi2021b]
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Ali Arab,
Betty Chinda,
George Medvedev,
William Siu,
Tao Gu,
Hui Guo,
Sylvain Moreno,
Ghassan Hamarneh,
Martin Ester,
and Xiaowei Song.
A Fast and Fully-Automated Deep-Learning Approach for Accurate Haemorrhage Segmentation and Volume Quantification in Non-Contrast Whole-Head CT (Arabi and Chinda: Joint first authors).
Nature - Scientific reports,
10(19389):1-12,
2020.
Keyword(s): Deep Learning,
Segmentation.
[bibtex-key = nature_sr2020b]
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Weina Jin,
Mostafa Fatehi,
Kumar Abhishek,
Mayur Mallya,
Brian Toyota,
and Ghassan Hamarneh.
Artificial Intelligence in Glioma Imaging: Challenges and Advances.
Journal of Neural Engineering,
17(2):021002,
2020.
Keyword(s): Glioma Imaging,
Machine Learning,
Deep Learning,
Survey/Review.
[bibtex-key = jne2020]
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Ismail M. Khater,
Ivan Robert Nabi,
and Ghassan Hamarneh.
A Review of Super-resolution Single Molecule Localization Microscopy Cluster Analysis and Quantification Methods.
Cell Patterns,
1(3):2666-3899,
2020.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Deep Learning,
Machine Learning,
Classification,
Graph based,
Biomarkers/Biosignatures,
Survey/Review.
[bibtex-key = cellpatterns2020]
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Rory Long,
Kathleen Moriarty,
Ben Cardoen,
Guang Gao,
A. Wayne Vogl,
François Jean,
Ghassan Hamarneh,
and Ivan Robert Nabi.
Super Resolution Microscopy and Deep Learning Identify Zika Virus Reorganization of the Endoplasmic Reticulum (Long and Moriarty: Joint first authors; Hamarneh and Nabi: Joint senior authors).
Nature - Scientific reports,
10(20937):1-18,
2020.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Machine Learning,
Deep Learning.
[bibtex-key = nature_sr2020a]
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Jeremy Kawahara,
Sara Daneshvar,
Giuseppe Argenziano,
and Ghassan Hamarneh.
Seven-Point Checklist and Skin Lesion Classification using Multi-Task Multi-Modal Neural Net.
IEEE Journal of Biomedical and Health Informatics (IEEE JBHI) (Special Issue on Skin Lesion Image Analysis for Melanoma Detection),
23(2):538-546,
2019.
Keyword(s): Color/Multichannel/Vector-valued,
Deep Learning,
Dermatology,
Classification,
Multimodal,
Datasets.
[bibtex-key = jbhi2019a]
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Jeremy Kawahara and Ghassan Hamarneh.
Fully Convolutional Neural Networks to Detect Clinical Dermoscopic Features.
IEEE Journal of Biomedical and Health Informatics (IEEE JBHI) (Special Issue on Skin Lesion Image Analysis for Melanoma Detection),
23(2):578-585,
2019.
Keyword(s): Color/Multichannel/Vector-valued,
Deep Learning,
Dermatology,
Classification,
Segmentation.
[bibtex-key = jbhi2019b]
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Ismail M. Khater,
Stephane Aroca-Ouellette,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Caveolae and scaffold detection from single molecule localization microscopy data using deep learning.
PLOS ONE,
14(8):1-17,
2019.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Deep Learning,
Machine Learning,
Classification,
Graph based,
Biomarkers/Biosignatures.
[bibtex-key = plosone2019]
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Anmol Sharma and Ghassan Hamarneh.
Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network.
IEEE Transactions on Medical Imaging (IEEE TMI),
39(4):1170-1183,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Generative Adversarial Network,
Synthesis/Simulation/Augmentation,
Multimodal.
[bibtex-key = tmi2019]
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Saeid Asgari Taghanaki,
Yefeng Zheng,
S. Kevin Zhou,
Bogdan Georgescu,
Puneet Sharma,
Daguang Xu,
Dorin Comaniciu,
and Ghassan Hamarneh.
Combo Loss: Handling Input and Output Imbalance in Multi-Organ Segmentation.
Computerized Medical Imaging and Graphics (CMIG),
75:24-33,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = cmig2019]
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Saeedeh Afshari,
Aicha BenTaieb,
and Ghassan Hamarneh.
Automatic Localization of Normal Active Organs in 3D PET Scans.
Computerized Medical Imaging and Graphics (CMIG),
70:111-118,
2018.
Keyword(s): Deep Learning,
Machine Learning,
Functional/Molecular/Dynamic Imaging,
Localization.
[bibtex-key = cmig2018c]
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Aicha BenTaieb and Ghassan Hamarneh.
Adversarial Stain Transfer for Histopathology Image Analysis.
IEEE Transactions on Medical Imaging (IEEE TMI),
37(3):792-802,
2018.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning,
Generative Adversarial Network.
[bibtex-key = tmi2018]
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Aicha BenTaieb,
Hector Li-Chang,
David Huntsman,
and Ghassan Hamarneh.
A Structured Latent Model for Ovarian Carcinoma Subtyping from Histopathology Slides.
Medical Image Analysis (MedIA),
39:194-205,
2017.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning,
Datasets.
[bibtex-key = media2017]
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Jeremy Kawahara,
Colin J. Brown,
Steven Miller,
Brian G. Booth,
Vann Chau,
Ruth Grunau,
Jill Zwicker,
and Ghassan Hamarneh.
BrainNetCNN: Convolutional Neural Networks for Brain Networks; Towards Predicting Neurodevelopment (Brown and Kawahara: Joint first authors).
NeuroImage,
146(1):1038-1049,
2017.
Keyword(s): Diffusion MRI/Tensor-valued,
Neurodevelopment,
Connectome,
Machine Learning,
Deep Learning.
[bibtex-key = neuroimage2017]
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Saeid Asgari Taghanaki,
Jeremy Kawahara,
Brandon Miles,
and Ghassan Hamarneh.
Pareto-Optimal Multi-objective Dimensionality Reduction Deep Auto-Encoder for Mammography Classification.
Computer Methods and Programs in Biomedicine,
145:85-93,
2017.
Keyword(s): Machine Learning,
Deep Learning,
Optimization.
[bibtex-key = cmpb2017]
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Kumar Abhishek and Ghassan Hamarneh.
Lesion Elevation Prediction from Skin Images Improves Diagnosis.
In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC),
pages 000–000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning.
[bibtex-key = miccai_isic2024b]
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Kumar Abhishek,
Jeremy Kawahara,
and Ghassan Hamarneh.
Segmentation Style Discovery: Application to Skin Lesion Images.
In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC),
pages 000–000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = miccai_isic2024a]
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Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
Continual-Zoo: Leveraging Zoo Models for Continual Classification of Medical Images.
In IEEE Computer Vision and Pattern Recognition (IEEE CVPR) Workshop on Continual Learning (CLVision),
pages 000-000,
2024.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Continual Learning,
Domain Generalization.
[bibtex-key = cvpr_clvision2024]
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Nourhan Bayasi,
Fayyad Jamil,
Alceu Bissoto,
Ghassan Hamarneh,
and Rafeef Garbi.
BiasPruner: Debiased Continual Learning for Medical Image Classification.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 000,
pages 000-000,
2024.
Keyword(s): Classification,
Dermatology,
Machine Learning,
Deep Learning,
Continual Learning,
AI Bias and Fairness.
[bibtex-key = miccai2024a]
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Adriano D'Alessandro,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
AFreeCA: Annotation-Free Counting for All.
In European Conference on Computer Vision (ECCV),
pages 000-000,
2024.
Keyword(s): Deep Learning,
Counting,
Ranking.
[bibtex-key = eccv2024]
-
Tanya Gatsak,
Kumar Abhishek,
Hanene Ben Yedder,
Saeid Asgari Taghanaki,
and Ghassan Hamarneh.
PET-Disentangler: PET Lesion Segmentation via Disentangled Healthy and Disease Feature Representations.
In The Society of Nuclear Medicine and Molecular Imaging (SNMMI) Annual Meeting,
pages 1,
2024.
Keyword(s): Enhancement/Restoration/Denoising,
Deep Learning,
Functional/Molecular/Dynamic Imaging,
Segmentation.
[bibtex-key = snmmi2024]
-
Aliasghar Khani,
Saeid Asgari Taghanaki,
Aditya Sanghi,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
SLiMe: Segment Like Me.
In International Conference on Learning Representations (ICLR),
2024.
Keyword(s): Deep Learning,
Machine Learning,
One-/Few-Shot Learning,
Segmentation,
Diffusion Models,
Foundational Models.
[bibtex-key = iclr2024]
-
Ashish Sinha and Ghassan Hamarneh.
TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields.
In ,
volume 000,
pages 000-000,
2024.
Keyword(s): Deep Learning,
Diffusion Models,
Anatomical Trees and Tubular Structures,
Neural Fields,
Synthesis/Simulation/Augmentation.
[bibtex-key = miccai2024b]
-
Kumar Abhishek,
Colin J. Brown,
and Ghassan Hamarneh.
$\zeta$-mixup: Richer, More Realistic Mixing of Multiple Images.
In Medical Imaging with Deep Learning (MIDL),
pages 1-5,
2023.
Keyword(s): Machine Learning,
Deep Learning,
Synthesis/Simulation/Augmentation.
[bibtex-key = midl2023]
-
Nourhan Bayasi,
Siyi Du,
Ghassan Hamarneh,
and Rafeef Garbi.
Continual-GEN: Continual Group Ensembling for Domain-agnostic Skin Lesion Classification.
In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC),
pages 000–000,
2023.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Classification,
Continual Learning.
[bibtex-key = miccai_isic2023a]
-
Adriano D'Alessandro,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
Learning-to-Count by Learning-to-Rank.
In Canadian Conference on Computer and Robot Vision (CRV),
pages 1-8,
2023.
Keyword(s): Deep Learning,
Counting,
Ranking.
[bibtex-key = crv2023]
-
Siyi Du,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets.
In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC),
pages 000–000,
2023.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation,
Transformers.
[bibtex-key = miccai_isic2023b]
-
Siyi Du,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets Segmentation.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
pages 000-000,
2023.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Transformers,
Classification.
[bibtex-key = miccai2023]
-
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
BoosterNet: Improving Domain Generalization of Deep Neural Nets using Culpability-Ranked Features.
In IEEE Computer Vision and Pattern Recognition (IEEE CVPR),
pages 528-538,
2022.
Keyword(s): Machine Learning,
Deep Learning,
Classification,
Continual Learning,
Domain Generalization,
Dermatology.
[bibtex-key = cvpr2022]
-
Siyi Du,
Ben Her,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning.
In European Conference on Computer Vision (ECCV) ISIC Skin Image Analysis Workshop (ECCV ISIC),
pages 185-202,
2022.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
AI Bias and Fairness,
Classification.
[bibtex-key = eccv_isic2022b]
-
Saeed Izadi,
Isaac Shiri,
Carlos Uribe,
Parham Geramifar,
Habib Zaidi,
Arman Rahmim,
and Ghassan Hamarneh.
Context-Aware Filtering for Direct Joint Attenuation and Scatter Correction of Whole-Body PET Images.
In The Society of Nuclear Medicine and Molecular Imaging (SNMMI) Annual Meeting,
pages 1,
2022.
Keyword(s): Enhancement/Restoration/Denoising,
Deep Learning,
Functional/Molecular/Dynamic Imaging.
[bibtex-key = snmmi2022]
-
Weina Jin,
Xiaoxiao Li,
and Ghassan Hamarneh.
Evaluating Explainable AI on Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements?.
In Association for the Advancement of Artificial Intelligence Conference (AAAI),
volume 36,
pages 11945-11953,
2022.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Glioma Imaging,
Machine Learning,
MRI,
Multimodal.
[bibtex-key = aaai2022]
-
Mayur Mallya and Ghassan Hamarneh.
Deep Multimodal Guidance for Medical Image Classification.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 13437,
pages 298–308,
2022.
Keyword(s): Dermatology,
Deep Learning,
MRI,
Microscopy,
Multimodal.
[bibtex-key = miccai2022]
-
Arezou Pakzad,
Kumar Abhishek,
and Ghassan Hamarneh.
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions.
In European Conference on Computer Vision (ECCV) ISIC Skin Image Analysis Workshop (ECCV ISIC),
pages 203–219,
2022.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
AI Bias and Fairness,
Classification.
[bibtex-key = eccv_isic2022a]
-
Saeid Asgari Taghanaki,
Aliasghar Khani,
Fereshte Khani,
Ali Gholami,
Linh Tran,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
MaskTune: Mitigating Shortcut Learning by Tuning to Explore (Asgari, Khani, Khani, Gholami: Equal contribution).
In Neural Information Processing Systems (NeurIPS),
pages 1-13,
2022.
Keyword(s): Classification,
Deep Learning.
[bibtex-key = neurips2022]
-
Kumar Abhishek and Ghassan Hamarneh.
Matthews Correlation Coefficient Loss for Deep Convolutional Networks: Application to Skin Lesion Segmentation.
In IEEE International Symposium on Biomedical Imaging (IEEE ISBI),
pages 225-229,
2021.
Keyword(s): Segmentation,
Machine Learning,
Deep Learning,
Dermatology,
Optimization.
[bibtex-key = isbi2021]
-
Kumar Abhishek,
Jeremy Kawahara,
and Ghassan Hamarneh.
Direct AI-based Prediction of Clinical Management Bypassing Diagnosis: Application to Skin Lesions.
In UBC Dermatology and Skin Science: Skin Research Day,
2021.
Keyword(s): Deep Learning,
Dermatology.
[bibtex-key = skin2021b]
-
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
Culprit-Prune-Net: Efficient Continual Sequential Multi-Domain Learning with Application to Skin Lesion Classification.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 12907,
pages 165-175,
2021.
Keyword(s): Classification,
Dermatology,
Machine Learning,
Deep Learning,
Continual Learning,
Domain Generalization.
[bibtex-key = miccai2021]
-
Ben Cardoen and Ghassan Hamarneh.
Learning to look beyond what we can see: Leveraging statistical learning to improve scientific discovery from fluorescence microscopy.
In Biomedical Imaging and Artificial Intelligence (BMIAI) cluster Fall Research Showcase, Vancouver, Canada,
pages 1,
2021.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Machine Learning,
Deep Learning,
Processing,
Belief Theory.
[bibtex-key = bmiai2021a]
-
Weina Jin and Ghassan Hamarneh.
Physician-Centered Explainable AI.
In Biomedical Imaging and Artificial Intelligence (BMIAI) cluster Fall Research Showcase, Vancouver, Canada,
pages 1,
2021.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Glioma Imaging.
[bibtex-key = bmiai2021c]
-
Weina Jin,
Xiaoxiao Li,
and Ghassan Hamarneh.
One Map Does Not Fit All: Evaluating Saliency Map Explanation on Multi-Modal Medical Images.
In International Conference on Machine Learning (ICML) workshop on Interpretable Machine Learning in Healthcare (IMLH),
pages 1-13,
2021.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Glioma Imaging,
Multimodal.
[bibtex-key = icml_imlh2021]
-
Zahra Mirikharaji,
Kumar Abhishek,
Saeed Izadi,
and Ghassan Hamarneh.
D-LEMA: Deep Learning Ensembles from Multiple Annotations.
In Biomedical Imaging and Artificial Intelligence (BMIAI) cluster Fall Research Showcase, Vancouver, Canada,
pages 1,
2021.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = bmiai2021b]
-
Zahra Mirikharaji,
Kumar Abhishek,
Saeed Izadi,
and Ghassan Hamarneh.
D-LEMA: Deep Learning Ensembles from Multiple Annotations - Application to Skin Lesion Segmentation.
In IEEE Computer Vision and Pattern Recognition (IEEE CVPR) ISIC Skin Image Analysis Workshop (CVPR ISIC),
pages 1837-1846,
2021.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = cvpr_isic2021]
-
Mengliu Zhao,
Jeremy Kawahara,
Sajjad Shamanian,
Kumar Abhishek,
and Ghassan Hamarneh.
Computerized Localization and Tracking of Pigmented Skin Lesions on 3D Whole Body Textured Skin Meshes (Zhao and Kawahara: Joint first authors).
In UBC Dermatology and Skin Science: Skin Research Day,
2021.
Keyword(s): Deep Learning,
Tracking,
Dermatology.
[bibtex-key = skin2021a]
-
Kumar Abhishek,
Ghassan Hamarneh,
and Mark S. Drew.
Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images.
In IEEE Computer Vision and Pattern Recognition (IEEE CVPR) ISIC Skin Image Analysis Workshop (CVPR ISIC),
pages 728-729,
2020.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = cvpr_isic2020]
-
Ali Arab,
Betty Chinda,
William Siu,
George Medvedev,
Tao Gu,
Hui Guo,
Sylvain Moreno,
Ghassan Hamarneh,
Martin Ester,
and Xiaowei Song.
A fully-automated convolutional neural network with deep supervision approach for haemorrhage segmentation and volume quantification in CT scans.
In American Society of Neuroradiology (ASNR),
pages 1,
2020.
Keyword(s): Deep Learning,
Machine Learning,
Segmentation.
[bibtex-key = asnr2020]
-
Shahab Aslani,
Vittorio Murino,
Michael Dayan,
Roger Tam,
Diego Sona,
and Ghassan Hamarneh.
Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI.
In IEEE International Symposium on Biomedical Imaging (IEEE ISBI),
pages 781-785,
2020.
Keyword(s): Segmentation,
Machine Learning,
Deep Learning,
Multiple Sclerosis,
MRI.
[bibtex-key = isbi2020]
-
Saeed Izadi and Ghassan Hamarneh.
Patch-based Non-Local Bayesian Networks for Blind Confocal Microscopy Denoising.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 12265,
pages 46–55,
2020.
Keyword(s): Microscopy,
Enhancement/Restoration/Denoising,
Machine Learning,
Deep Learning.
[bibtex-key = miccai2020]
-
M.Sadegh Saberian,
Kathleen Moriarty,
Andrea Olmstead,
François Jean,
Ivan Robert Nabi,
Maxwell Libbrecht,
and Ghassan Hamarneh.
Drug Repurposing Efficacy Estimation based on Morphological Analysis of SARS-CoV-2 Infected Cells within a Multiple Instance Learning Framework.
In Machine learning for computational biology conference (MLCB),
pages 1-13,
2020.
Keyword(s): Deep Learning,
Machine Learning,
COVID19,
SARS-CoV-2.
[bibtex-key = mlcb2020]
-
Mengliu Zhao,
Sajjad Shamanian,
Priyanka Chandrashekar,
Kumar Abhishek,
Jeremy Kawahara,
and Ghassan Hamarneh.
Acquisition and Analysis of 3D Whole Body Skin Images for Dermatological Studies.
In The 2nd Annual Tri-Cluster Research Day, Canada,
pages 1,
2020.
Keyword(s): Deep Learning,
Dermatology.
[bibtex-key = tricluster2020a]
-
Mengliu Zhao,
Sajjad Shamanian,
Priyanka Chandrashekar,
Kumar Abhishek,
Jeremy Kawahara,
and Ghassan Hamarneh.
Skin Lesion Localization and Tracking on 3D Whole Body Colored Surface Images.
In Centre for Artificial Intelligence Decision-making and Action (CAIDA), BC's AI Showcase, Canada,
pages 1,
2020.
Keyword(s): Deep Learning,
Dermatology.
[bibtex-key = caida2020a]
-
Kumar Abhishek and Ghassan Hamarneh.
Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Simulation and Synthesis in Medical Imaging (MICCAI SASHIMI),
volume 11827,
pages 71-80,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Generative Adversarial Network,
Dermatology,
Synthesis/Simulation/Augmentation.
[bibtex-key = miccai_sashimi2019]
-
Saeedeh Afshari,
Aicha BenTaieb,
Zahra Mirikharaji,
and Ghassan Hamarneh.
Weakly Supervised Fully Convolutional Network for PET Lesion Segmentation.
In SPIE Medical Imaging,
volume 10949,
pages 1-7,
2019.
Keyword(s): Deep Learning,
Machine Learning,
Functional/Molecular/Dynamic Imaging,
Localization.
[bibtex-key = spiemi2019]
-
Arafat Hussain,
Ghassan Hamarneh,
and Rafeef Abugharbieh.
ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11769,
pages 130-138,
2019.
Keyword(s): Classification,
Machine Learning,
Deep Learning.
[bibtex-key = miccai2019e]
-
Arafat Hussain,
Ghassan Hamarneh,
and Rafeef Abugharbieh.
Renal Cell Carcinoma Staging with Learnable Image Histogram-based Deep Neural Network.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI),
volume 11861,
pages 533-540,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Classification.
[bibtex-key = miccai_mlmi2019c]
-
Saeed Izadi,
Zahra Mirikharaji,
Mengliu Zhao,
and Ghassan Hamarneh.
WhiteNNer - Blind Image Denoising via Noise Whiteness Priors.
In International Conference on Computer Vision workshop on Visual Recognition for Medical Images (ICCV VRMI),
pages 476-484,
2019.
Keyword(s): Microscopy,
Enhancement/Restoration/Denoising,
Machine Learning,
Deep Learning.
[bibtex-key = iccv_vrmi2019b]
-
Saeed Izadi,
Darren Sutton,
and Ghassan Hamarneh.
Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning for Medical Image Reconstruction (MICCAI MLMIR),
volume 11905,
pages 236-244,
2019.
Keyword(s): Microscopy,
Super Resolution,
Enhancement/Restoration/Denoising,
Machine Learning,
Deep Learning.
[bibtex-key = miccai_mlmir2019]
-
Weina Jin,
Sheelagh Carpendale,
Ghassan Hamarneh,
and Diane Gromala.
Bridging AI Developers and End Users: an End-User-Centred Explainable AI Taxonomy and Visual Vocabularies.
In IEEE Visualization (IEEE Vis),
2019.
Keyword(s): Explainable AI (XAI),
Deep Learning,
User Interaction,
Visualization.
[bibtex-key = vis2019]
-
Zahra Mirikharaji,
Yiqi Yan,
and Ghassan Hamarneh.
Learning to Segment Skin Lesions from Noisy Annotations.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Medical Image Learning with Less Labels and Imperfect Data (MICCAI MIL3ID),
volume 11795,
pages 207-215,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Dermatology.
[bibtex-key = miccai_mil3id2019]
-
Saeid Asgari Taghanaki,
Kumar Abhishek,
Shekoofeh Azizi,
and Ghassan Hamarneh.
A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations.
In IEEE Computer Vision and Pattern Recognition (IEEE CVPR),
pages 11332-11341,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Classification.
[bibtex-key = cvpr2019]
-
Saeid Asgari Taghanaki,
Kumar Abhishek,
and Ghassan Hamarneh.
Improved Inference via Deep Input Transfer.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11769,
pages 819-827,
2019.
Keyword(s): Segmentation,
Machine Learning,
Deep Learning.
[bibtex-key = miccai2019b]
-
Saeid Asgari Taghanaki,
Aicha BenTaieb,
Anmol Sharma,
S. Kevin Zhou,
Yefeng Zheng,
Bogdan Georgescu,
Puneet Sharma,
Daguang Xu,
Dorin Comaniciu,
and Ghassan Hamarneh.
SAT: Select, Attend, and Transfer: Light, Learnable Skip Connections.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI),
volume 11861,
pages 417-425,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = miccai_mlmi2019b]
-
Saeid Asgari Taghanaki,
Mohammad Havaei,
Tess Berthier,
Francis Dutil,
Lisa Di Jorio,
Ghassan Hamarneh,
and Yoshua Bengio.
InfoMask: Masked Variational Latent Representation to Localize Chest Disease.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11769,
pages 739-747,
2019.
Keyword(s): Classification,
Machine Learning,
Deep Learning.
[bibtex-key = miccai2019a]
-
Yiqi Yan,
Jeremy Kawahara,
and Ghassan Hamarneh.
Melanoma Recognition via Visual Attention.
In Information Processing in Medical Imaging (IPMI),
volume 11492,
pages 793–804,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Dermatology.
[bibtex-key = ipmi2019]
-
Hanene Ben Yedder,
Ben Cardoen,
Majid Shokoufi,
Farid Golnaraghi,
and Ghassan Hamarneh.
Limited-Angle Diffuse Optical Tomography Image Reconstruction using Deep Learning.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11764,
pages 66-74,
2019.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning,
Diffuse Optical Tomography.
[bibtex-key = miccai2019c]
-
Chris Yoon,
Ghassan Hamarneh,
and Rafeef Abugharbieh.
Generalizable Feature Learning in the Presence of Data Bias and Domain Class Imbalance with Application to Skin Lesion Classification.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11767,
pages 365-373,
2019.
Keyword(s): Classification,
Dermatology,
Machine Learning,
Deep Learning.
[bibtex-key = miccai2019d]
-
Mengliu Zhao and Ghassan Hamarneh.
Retinal Image Classification via Vasculature-guided Sequential Attention.
In International Conference on Computer Vision workshop on Visual Recognition for Medical Images (ICCV VRMI),
pages 381-387,
2019.
Keyword(s): Anatomical Trees and Tubular Structures,
Classification,
Shape Modelling and Analysis,
Machine Learning,
Deep Learning.
[bibtex-key = iccv_vrmi2019a]
-
Mengliu Zhao and Ghassan Hamarneh.
Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI),
volume 11861,
pages 637-645,
2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Anatomical Trees and Tubular Structures,
Shape Modelling and Analysis,
Bifurcation/Junction.
[bibtex-key = miccai_mlmi2019a]
-
Aicha BenTaieb and Ghassan Hamarneh.
Predicting Cancer with a Recurrent Visual Attention Model for Histopathology Images.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11071,
pages 129-137,
2018.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning.
[bibtex-key = miccai2018b]
-
Arafat Hussain,
Ghassan Hamarneh,
and Rafeef Abugharbieh.
Noninvasive Determination of Gene Mutations in Clear Cell Renal Cell Carcinoma using Multiple Instance Decisions Aggregated CNN.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11071,
pages 657-665,
2018.
Keyword(s): Super Resolution,
Machine Learning,
Deep Learning.
[bibtex-key = miccai2018d]
-
Saeed Izadi,
Zahra Mirikharaji,
Jeremy Kawahara,
and Ghassan Hamarneh.
Generative Adversarial Networks to Segment Skin Lesions.
In IEEE International Symposium on Biomedical Imaging (IEEE ISBI),
pages 881-884,
2018.
Keyword(s): Machine Learning,
Dermatology,
Color/Multichannel/Vector-valued,
Deep Learning,
Generative Adversarial Network,
Segmentation.
[bibtex-key = isbi2018b]
-
Saeed Izadi,
Kathleen Moriarty,
and Ghassan Hamarneh.
Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements?.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11070,
pages 57-64,
2018.
Keyword(s): Microscopy,
Super Resolution,
Enhancement/Restoration/Denoising,
Machine Learning,
Deep Learning.
[bibtex-key = miccai2018c]
-
Jeremy Kawahara,
Colin J. Brown,
and Ghassan Hamarneh.
Connectome Priors in Deep Neural Networks to Predict Autism (Kawahara and Brown: Joint first authors).
In IEEE International Symposium on Biomedical Imaging (IEEE ISBI),
pages 110-113,
2018.
Keyword(s): Diffusion MRI/Tensor-valued,
Autism,
Connectome,
Machine Learning,
Deep Learning,
Classification.
[bibtex-key = isbi2018c]
-
Zahra Mirikharaji and Ghassan Hamarneh.
Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 11073,
pages 737-745,
2018.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Dermatology,
Color/Multichannel/Vector-valued,
Shape Modelling and Analysis.
[bibtex-key = miccai2018a]
-
Zahra Mirikharaji,
Saeed Izadi,
Jeremy Kawahara,
and Ghassan Hamarneh.
Deep Auto-context Fully Convolutional Neural Network for Skin Lesion Segmentation.
In IEEE International Symposium on Biomedical Imaging (IEEE ISBI),
pages 877-880,
2018.
Keyword(s): Machine Learning,
Dermatology,
Color/Multichannel/Vector-valued,
Deep Learning,
Segmentation.
[bibtex-key = isbi2018a]
-
Adria Romero-Lopez,
Tory Jarmain,
Latif Abid,
Jevin Maltais,
Albert Jimenez,
Jeremy Kawahara,
Ghassan Hamarneh,
Shuang Ao,
Mohamed Akrout,
Anirudh Challa,
Michael Aristocrat,
Katrina Cirone,
Stephen Solis,
and Andrew McCann.
Q&A-informed image-based deep learning for skin disease recognition in the real world.
In Self-Organizing Conference on Machine Learning (SOCML),
pages 1,
2018.
Keyword(s): Machine Learning,
Dermatology,
Color/Multichannel/Vector-valued,
Deep Learning,
Reinforcement Learning,
Classification.
[bibtex-key = socml2018]
-
Saeid Asgari Taghanaki,
Arkadeep Das,
and Ghassan Hamarneh.
Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Deep Learning Fails (MICCAI DLF),
volume 11038,
pages 87-94,
2018.
Keyword(s): Machine Learning,
Deep Learning,
Adversarial Attacks.
[bibtex-key = miccai_dlf2018]
-
Hanene Ben Yedder,
Aicha BenTaieb,
Majid Shokoufi,
Amir Zahiremami,
Farid Golnaraghi,
and Ghassan Hamarneh.
Deep Learning based Image Reconstruction for Diffuse Optical Tomography.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning for Medical Image Reconstruction (MICCAI MLMIR),
volume 11074,
pages 112-119,
2018.
Keyword(s): Image Reconstruction,
Diffuse Optical Tomography,
Machine Learning,
Deep Learning.
[bibtex-key = miccai_mlmir2018]
-
Mengliu Zhao and Ghassan Hamarneh.
TreeNet: Multi-Loss Deep Learning Network to Predict Branch Direction for Extracting 3D Anatomical Trees.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Deep Learning in Medical Image Analysis (MICCAI DLMIA),
volume 11045,
pages 47-55,
2018.
Keyword(s): Anatomical Trees and Tubular Structures,
Shape Modelling and Analysis,
Machine Learning,
Deep Learning,
Bifurcation/Junction.
[bibtex-key = miccai_dlmia2018]
-
Aicha BenTaieb and Ghassan Hamarneh.
Artificial Pathologists: Machine Learning Models for Histopathology.
In Annual SFU Health Research Day - Women's Health Research Symposium,
2017.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning.
[bibtex-key = sfu_health2017]
-
Aicha BenTaieb and Ghassan Hamarneh.
Topology Aware Fully Convolutional Networks For Histology Gland Segmentation.
In 2nd Annual Health Technology Symposium, Vancouver, Canada,
pages 1,
2017.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning.
[bibtex-key = healthtech2017a]
-
Aicha BenTaieb and Ghassan Hamarneh.
Uncertainty Driven Multi-Loss Fully Convolutional Networks for Histopathology.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Large-scale Annotation of Biomedical data and Expert Label Synthesis (MICCAI LABELS),
volume 10552,
pages 155-163,
2017.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning.
[bibtex-key = miccai_labels2017a]
-
Arafat Hussain,
Alborz Amir-Khalili,
Ghassan Hamarneh,
and Rafeef Abugharbieh.
Collage CNN for Renal Cell Carcinoma Detection from CT.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI),
volume 10541,
pages 229-237,
2017.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Localization.
[bibtex-key = miccai_mlmi2017]
-
Arafat Hussain,
Alborz Amir-Khalili,
Ghassan Hamarneh,
and Rafeef Abugharbieh.
Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 10435,
pages 612-620,
2017.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Localization.
[bibtex-key = miccai2017c]
-
Jeremy Kawahara,
Colin J. Brown,
Steven Miller,
Brian G. Booth,
Vann Chau,
Ruth Grunau,
Jill Zwicker,
and Ghassan Hamarneh.
BrainNetCNN: Artificial Convolutional Neural Networks for Connectomes.
In 2nd Annual Health Technology Symposium, Vancouver, Canada,
pages 1,
2017.
Keyword(s): Diffusion MRI/Tensor-valued,
Neurodevelopment,
Connectome,
Machine Learning,
Deep Learning,
Classification.
[bibtex-key = healthtech2017c]
-
Jeremy Kawahara,
Kathleen Moriarty,
and Ghassan Hamarneh.
Graph Geodesics to Find Progressively Similar Skin Lesion Images.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Graphs in Biomedical Image Analysis (MICCAI GRAIL),
pages 1-11,
2017.
Keyword(s): Machine Learning,
Dermatology,
Color/Multichannel/Vector-valued,
Deep Learning,
Graph based.
[bibtex-key = miccai_grail2017]
-
Aicha BenTaieb and Ghassan Hamarneh.
Topology Aware Fully Convolutional Networks For Histology Gland Segmentation.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 9900,
pages 460-468,
2016.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning.
[bibtex-key = miccai2016a]
-
Aicha BenTaieb,
Jeremy Kawahara,
and Ghassan Hamarneh.
Multi-Loss Convolutional Networks for Gland Analysis in Microscopy.
In IEEE International Symposium on Biomedical Imaging (IEEE ISBI),
pages 642-645,
2016.
Keyword(s): Machine Learning,
Microscopy,
Deep Learning.
[bibtex-key = isbi2016a]
-
Jeremy Kawahara,
Aicha BenTaieb,
and Ghassan Hamarneh.
Deep Features to Classify Skin Lesions.
In IEEE International Symposium on Biomedical Imaging (IEEE ISBI),
pages 1397-1400,
2016.
Keyword(s): Machine Learning,
Dermatology,
Deep Learning.
[bibtex-key = isbi2016b]
-
Jeremy Kawahara,
Colin J. Brown,
Steven Miller,
Brian G. Booth,
Vann Chau,
Ruth Grunau,
Jill Zwicker,
and Ghassan Hamarneh.
BrainNetCNN: Artificial Convolutional Neural Networks for Connectomes.
In Annual Neuroscience Extravaganza, Centre for Brain Health, BC, Canada,
2016.
Keyword(s): Diffusion MRI/Tensor-valued,
Neurodevelopment,
Connectome,
Machine Learning,
Deep Learning.
[bibtex-key = neuroscix2016a]
-
Jeremy Kawahara and Ghassan Hamarneh.
Multi-Resolution-Tract CNN with Hybrid Pretrained and Skin-Lesion Trained Layers.
In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI),
volume 10019,
pages 164-171,
2016.
Keyword(s): Machine Learning,
Dermatology,
Color/Multichannel/Vector-valued,
Deep Learning.
[bibtex-key = miccai_mlmi2016a]
-
Aicha BenTaieb,
Hector Li-Chang,
David Huntsman,
and Ghassan Hamarneh.
Automatic Diagnosis of Ovarian Carcinomas via Sparse Multiresolution Tissue Representation.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
volume 9349,
pages 629-636,
2015.
Keyword(s): Machine Learning,
Microscopy,
Deep Learning.
[bibtex-key = miccai2015b]
-
Kumar Abhishek,
Aditi Jain,
and Ghassan Hamarneh.
Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets.
Technical report arXiv:2401.14497,
1 2024.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Software and Tools,
Datasets.
[bibtex-key = arxiv:2401.14497]
-
Ashwin Samudre,
Guang Gao,
Ben Cardoen,
Ivan Robert Nabi,
and Ghassan Hamarneh.
nERdy: network analysis of endoplasmic reticulum (Nabi and Hamarneh: Joint senior authors).
Technical report biorxiv:2024.02.20.581259,
2 2024.
Keyword(s): Super Resolution Microscopy,
Software and Tools,
Network Modelling and Analysis,
Machine Learning,
Deep Learning,
Anatomical Trees and Tubular Structures,
Synthesis/Simulation/Augmentation.
[bibtex-key = biorxiv_2024_02_20_581259]
-
Ashish Sinha and Ghassan Hamarneh.
TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields.
Technical report arxiv.2403.08974,
3 2024.
Keyword(s): Deep Learning,
Diffusion Models,
Anatomical Trees and Tubular Structures,
Neural Fields,
Synthesis/Simulation/Augmentation.
[bibtex-key = arxiv:2403.08974]
-
Adriano D'Alessandro,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
Counting Objects in Images using Deep Learning: Methods and Current Challenges.
Technical report Research Square (Preprint) 2986682,
6 2023.
Keyword(s): Deep Learning,
Counting,
Survey/Review,
Dermatology.
[bibtex-key = research_square2023_2986682]
-
Adriano D'Alessandro,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
SYRAC: Synthesize, Rank, and Count.
Technical report arxiv.2310.01662,
10 2023.
Keyword(s): Deep Learning,
Counting,
Ranking.
[bibtex-key = arxiv:2310.01662]
-
Siyi Du,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets Segmentation.
Technical report arxiv.2307.02100,
7 2023.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Transformers,
Classification.
[bibtex-key = arxiv:2307.02100]
-
Weina Jin,
Jianyu Fan,
Diane Gromala,
Philippe Pasquier,
and Ghassan Hamarneh.
Invisible Users: Uncovering End-Users' Requirements for Explainable AI via Explanation Forms and Goals.
Technical report arxiv.2302.06609,
2 2023.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Multimodal,
Software and Tools.
[bibtex-key = arxiv:2302.06609]
-
Aliasghar Khani,
Saeid Asgari Taghanaki,
Aditya Sanghi,
Ali Mahdavi-Amiri,
and Ghassan Hamarneh.
SLiMe: Segment Like Me.
Technical report arxiv.2309.03179,
9 2023.
Keyword(s): Deep Learning,
Segmentation.
[bibtex-key = arxiv:2309.03179]
-
Ivan Robert Nabi,
Ben Cardoen,
Ismail M. Khater,
Guang Gao,
Timothy H. Wong,
and Ghassan Hamarneh.
AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth.
Technical report arxiv.2305.17193,
5 2023.
Keyword(s): Machine Learning,
Deep Learning,
Weak Supervision,
Super Resolution Microscopy,
Validation.
[bibtex-key = arxiv:2305.17193]
-
Ashish Sinha,
Jeremy Kawahara,
Arezou Pakzad,
Kumar Abhishek,
Matthieu Ruthven,
Enjie Ghorbel,
Anis Kacem,
Djamila Aouada,
and Ghassan Hamarneh.
DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images (Sinha, Kawahara, Pakzad: Joint first authors).
Technical report arxiv.2305.12621,
5 2023.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Segmentation,
Synthesis/Simulation/Augmentation,
Datasets.
[bibtex-key = arxiv:2305.12621]
-
Kumar Abhishek,
Colin J. Brown,
and Ghassan Hamarneh.
Multi-Sample $\zeta$-mixup: Richer, More Realistic Synthetic Samples from a $p$-Series Interpolant.
Technical report arXiv:2204.03323,
4 2022.
Keyword(s): Machine Learning,
Deep Learning,
Synthesis/Simulation/Augmentation.
[bibtex-key = arxiv:2204.03323]
-
Parsa Alan,
Kurt Vandevoorde,
Bharat Joshi,
Ben Cardoen,
Guang Gao,
Yahya Mohammadzadeh,
Ghassan Hamarneh,
and Ivan Robert Nabi.
Basal Gp78-dependent mitophagy promotes mitochondrial health and limits mitochondrial ROS (Alan, Vandevoorde, Joshi, and Cardoen: Joint first authors; Hamarneh and Nabi: Joint senior authors).
Technical report Research Square (Preprint) 1559637,
4 2022.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Machine Learning,
Deep Learning,
Image Processing,
Belief Theory.
[bibtex-key = research_square2022_1559637]
-
Siyi Du,
Ben Her,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning.
Technical report arXiv:2208.10013,
8 2022.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
AI Bias and Fairness,
Classification.
[bibtex-key = arxiv:2208.10013]
-
Saurabh Garg,
Haoyao Ruan,
Ghassan Hamarneh,
Dawn M. Behne,
Allard Jongman,
Joan Sereno,
and Yue Wang.
Mouth2audio: Intelligible Audio Synthesis from Videos with Distinctive Vowel Articulation.
Technical report SSRN Electronic Journal 4146179,
6 2022.
Keyword(s): Segmentation,
Tracking,
Color/Multichannel/Vector-valued,
Speech and Language,
Facial Analysis,
Spatio-Temporal,
Deep Learning.
[bibtex-key = ssrn2022_4146179]
-
Saeed Izadi,
Isaac Shiri,
Carlos Uribe,
Parham Geramifar,
Habib Zaidi,
Arman Rahmim,
and Ghassan Hamarneh.
Enhanced Direct Joint Attenuation and Scatter Correction of Whole-Body PET Images via Context-Aware Deep Networks.
Technical report medRxiv 2022.05.26.22275662,
May 2022.
Keyword(s): Enhancement/Restoration/Denoising,
Deep Learning,
Functional/Molecular/Dynamic Imaging.
[bibtex-key = medrxiv2022_20220526]
-
Saeed Izadi,
Darren Sutton,
and Ghassan Hamarneh.
Image Denoising in the Deep Learning Era.
Technical report Research Square (Preprint) 1806416,
6 2022.
Keyword(s): Deep Learning,
Enhancement/Restoration/Denoising,
Survey/Review.
[bibtex-key = research_square2022_1806416]
-
Weina Jin,
Jianyu Fan,
Diane Gromala,
Philippe Pasquier,
Xiaoxiao Li,
and Ghassan Hamarneh.
Transcending XAI Algorithm Boundaries through End-User-Inspired Design.
Technical report arXiv:2208.08739,
8 2022.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Multimodal.
[bibtex-key = arxiv:2208.08739]
-
Weina Jin,
Mostafa Fatehi,
Ru Guo,
and Ghassan Hamarneh.
Evaluating the Clinical Utility of Artificial Intelligence Assistance and its Explanation on Glioma Grading Task.
Technical report medRxiv 2022.12.07.22282726,
December 2022.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Multimodal.
[bibtex-key = medrxiv2022_22282726]
-
Weina Jin,
Xiaoxiao Li,
Mostafa Fatehi,
and Ghassan Hamarneh.
Guidelines and evaluation for clinical explainable AI on medical image analysis.
Technical report arXiv:2202.10553,
2 2022.
Keyword(s): Deep Learning,
Explainable AI (XAI).
[bibtex-key = arxiv:2202.10553]
-
Weina Jin,
Xiaoxiao Li,
and Ghassan Hamarneh.
Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements?.
Technical report arXiv:2203.06487,
3 2022.
Keyword(s): Deep Learning,
Explainable AI (XAI),
Multimodal.
[bibtex-key = arxiv:2203.06487]
-
Mayur Mallya and Ghassan Hamarneh.
Deep Multimodal Guidance for Medical Image Classification.
Technical report arXiv:2203.05683,
3 2022.
Keyword(s): Dermatology,
Deep Learning,
MRI,
Microscopy,
Multimodal.
[bibtex-key = arxiv:2203.05683]
-
Zahra Mirikharaji,
Kumar Abhishek,
Alceu Bissoto,
Catarina Barata,
Sandra Avila,
Eduardo Valle,
M. Emre Celebi,
and Ghassan Hamarneh.
A Survey on Deep Learning for Skin Lesion Segmentation (Mirikharaji and Abhishek: Joint first authors; Celebi and Hamarneh: Joint senior authors).
Technical report arXiv:2206.00356,
6 2022.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation,
Survey/Review,
Dermatology.
[bibtex-key = arxiv:2206.00356]
-
Arezou Pakzad,
Kumar Abhishek,
and Ghassan Hamarneh.
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions.
Technical report arXiv:2208.13528,
8 2022.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
AI Bias and Fairness,
Classification.
[bibtex-key = arxiv:2208.13528]
-
Hanene Ben Yedder,
Ben Cardoen,
Majid Shokoufi,
Farid Golnaraghi,
and Ghassan Hamarneh.
Orthogonal Multi-frequency Fusion Based Image Reconstruction and Diagnosis in Diffuse Optical Tomography.
Technical report techrxiv:21574533,
11 2022.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning,
Diffuse Optical Tomography.
[bibtex-key = techrxiv_21574533]
-
Mengliu Zhao,
Jeremy Kawahara,
Sajjad Shamanian,
Kumar Abhishek,
Priyanka Chandrashekar,
and Ghassan Hamarneh.
Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Skin Textured Meshes (Zhao and Kawahara: Joint first authors).
Technical report arXiv:2105.00374,
5 2021.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Optimization,
Registration and Matching,
Graph based,
Tracking.
[bibtex-key = arxiv:2105.00374]
-
Kumar Abhishek and Ghassan Hamarneh.
Matthews Correlation Coefficient Loss for Deep Convolutional Networks: Application to Skin Lesion Segmentation.
Technical report arXiv:2010.13454,
10 2020.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = arxiv:2010.13454]
-
Kumar Abhishek,
Ghassan Hamarneh,
and Mark S. Drew.
Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images.
Technical report arxiv:2003.10111,
3 2020.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = arxiv:2003.10111]
-
Kumar Abhishek,
Jeremy Kawahara,
and Ghassan Hamarneh.
Predicting the Clinical Management of Skin Lesions Using Deep Learning.
Technical report medRxiv 2020.11.02.20223941,
November 2020.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Clinical Management.
[bibtex-key = medrxiv2020_20223941]
-
Ben Cardoen and Ghassan Hamarneh.
Introduction to Causality.
Technical report SFU-Summit-20939,
12 2020.
Keyword(s): Machine Learning,
Deep Learning,
Causality.
[bibtex-key = sfu_summit_cardoen_2021a]
-
Saeed Izadi and Ghassan Hamarneh.
Patch-based Non-Local Bayesian Networks for Blind Confocal Microscopy Denoising.
Technical report arxiv:2003.11177,
3 2020.
Keyword(s): Microscopy,
Enhancement/Restoration/Denoising,
Machine Learning,
Deep Learning.
[bibtex-key = arxiv:2003.11177]
-
Ivan Klyuzhin,
Yixi Xu,
Anthony Ortiz,
Juan Lavista Ferres,
Ghassan Hamarneh,
and Arman Rahmim.
Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features.
Technical report medrxiv:20198077,
September 2020.
Keyword(s): Deep Learning,
Machine Learning,
Radiomics,
Functional/Molecular/Dynamic Imaging.
[bibtex-key = medrxiv2020_20198077]
-
Rory Long,
Kathleen Moriarty,
Ben Cardoen,
Guang Gao,
A. Wayne Vogl,
François Jean,
Ghassan Hamarneh,
and Ivan Robert Nabi.
Super Resolution Microscopy and Deep Learning Identify Zika Virus Reorganization of the Endoplasmic Reticulum (Long and Moriarty: Joint first authors; Hamarneh and Nabi: Joint senior authors.
Technical report biorxiv:091611,
5 2020.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Machine Learning,
Deep Learning.
[bibtex-key = biorxiv_2020_091611]
-
Zahra Mirikharaji,
Kumar Abhishek,
Saeed Izadi,
and Ghassan Hamarneh.
D-LEMA: Deep Learning Ensembles from Multiple Annotations - Application to Skin Lesion Segmentation.
Technical report arXiv:2012.07206,
12 2020.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = arxiv:2012.07206]
-
Hanene Ben Yedder,
Ben Cardoen,
and Ghassan Hamarneh.
Deep Learning for Biomedical Image Reconstruction: A Survey.
Technical report arxiv:2002.12351,
2 2020.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning,
Survey/Review.
[bibtex-key = arxiv:2002.12351]
-
Hanene Ben Yedder,
Ben Cardoen,
Majid Shokoufi,
Farid Golnaraghi,
and Ghassan Hamarneh.
Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography.
Technical report techrxiv:13150805,
10 2020.
Keyword(s): Image Reconstruction,
Machine Learning,
Deep Learning,
Synthesis/Simulation/Augmentation,
Diffuse Optical Tomography.
[bibtex-key = techrxiv_13150805]
-
Kumar Abhishek and Ghassan Hamarneh.
Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis.
Technical report arxiv:1906.05845,
6 2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = arxiv:1906.05845]
-
Shahab Aslani,
Vittorio Murino,
Michael Dayan,
Roger Tam,
Diego Sona,
and Ghassan Hamarneh.
Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI.
Technical report arxiv:1910.10035,
10 2019.
Keyword(s): Segmentation,
Machine Learning,
Deep Learning,
Multiple Sclerosis,
MRI.
[bibtex-key = arxiv:1910.10035]
-
Aicha BenTaieb and Ghassan Hamarneh.
Deep Learning Models for Digital Pathology.
Technical report arxiv:1910.12329,
10 2019.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning,
Generative Adversarial Network,
Survey/Review.
[bibtex-key = arxiv:1910.12329]
-
Saeed Izadi,
Darren Sutton,
and Ghassan Hamarneh.
Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy.
Technical report arxiv:1906.07802,
6 2019.
Keyword(s): Microscopy,
Super Resolution,
Enhancement/Restoration/Denoising,
Machine Learning,
Deep Learning.
[bibtex-key = arxiv:1906.07802]
-
Weina Jin,
Mostafa Fatehi,
Kumar Abhishek,
Mayur Mallya,
Brian Toyota,
and Ghassan Hamarneh.
Artificial Intelligence in Glioma Imaging: Challenges and Advances.
Technical report arxiv:1911.12886,
11 2019.
Keyword(s): Glioma Imaging,
Machine Learning,
Deep Learning.
[bibtex-key = arxiv:1911.12886]
-
Jeremy Kawahara and Ghassan Hamarneh.
Visual Diagnosis of Dermatological Disorders: Human and Machine Performance.
Technical report arxiv:1906.01256,
6 2019.
Keyword(s): Survey/Review,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Dermatology,
Classification.
[bibtex-key = arxiv:1906.01256]
-
Ismail M. Khater,
Stephane Aroca-Ouellette,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Caveolae and scaffold detection from single molecule localization microscopy data using deep learning.
Technical report biorxiv:495382,
1 2019.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Machine Learning,
Deep Learning,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = biorxiv_2019_526327]
-
Zahra Mirikharaji,
Yiqi Yan,
and Ghassan Hamarneh.
Learning to Segment Skin Lesions from Noisy Annotations.
Technical report arxiv:1906.03815,
6 2019.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = arxiv:1906.03815]
-
Anmol Sharma and Ghassan Hamarneh.
Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network.
Technical report arxiv:1904.12200,
4 2019.
Keyword(s): Glioma Imaging,
Machine Learning,
Deep Learning,
Generative Adversarial Network,
Multimodal.
[bibtex-key = arxiv:1904.12200]
-
Saeid Asgari Taghanaki,
Kumar Abhishek,
Joseph Paul Cohen,
Julien Cohen-Adad,
and Ghassan Hamarneh.
Deep Semantic Segmentation of Natural and Medical Images: A Review.
Technical report arxiv:1910.07655,
10 2019.
Keyword(s): Survey/Review,
Segmentation,
Machine Learning,
Deep Learning.
[bibtex-key = arxiv:1910.07655]
-
Saeid Asgari Taghanaki,
Kumar Abhishek,
and Ghassan Hamarneh.
Improved Inference via Deep Input Transfer.
Technical report arxiv:1904.02307,
4 2019.
Keyword(s): Machine Learning,
Deep Learning.
[bibtex-key = arxiv:1904.02307]
-
Saeid Asgari Taghanaki,
Kumar Abhishek,
and Ghassan Hamarneh.
Signed Input Regularization.
Technical report arxiv:1911.07086,
12 2019.
Keyword(s): Machine Learning,
Deep Learning.
[bibtex-key = arxiv:1911.07086]
-
Saeid Asgari Taghanaki,
Mohammad Havaei,
Tess Berthier,
Francis Dutil,
Lisa Di Jorio,
Ghassan Hamarneh,
and Yoshua Bengio.
InfoMask: Masked Variational Latent Representation to Localize Chest Disease.
Technical report arxiv:1903.11741,
3 2019.
Keyword(s): Machine Learning,
Deep Learning.
[bibtex-key = arxiv:1903.11741]
-
Saeid Asgari Taghanaki,
Aicha BenTaieb,
Anmol Sharma,
S. Kevin Zhou,
Yefeng Zheng,
Bogdan Georgescu,
Puneet Sharma,
Sasa Grbic,
Zhoubing Xu,
Dorin Comaniciu,
and Ghassan Hamarneh.
Select, Attend, and Transfer: Light, Learnable Skip Connections.
Technical report arxiv:1703.04559,
4 2018.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = arxiv:1804.05181]
-
Saeid Asgari Taghanaki,
Yefeng Zheng,
S. Kevin Zhou,
Bogdan Georgescu,
Puneet Sharma,
Daguang Xu,
Dorin Comaniciu,
and Ghassan Hamarneh.
Combo Loss: Handling Input and Output Imbalance in Multi-Organ Segmentation.
Technical report arxiv:1703.04559,
5 2018.
Keyword(s): Machine Learning,
Deep Learning,
Segmentation.
[bibtex-key = arxiv:1805.02798]
-
Jeremy Kawahara and Ghassan Hamarneh.
Fully Convolutional Networks to Detect Clinical Dermoscopic Features.
Technical report arxiv:1703.04559,
3 2017.
Keyword(s): Machine Learning,
Deep Learning,
Dermatology,
Challenge.
[bibtex-key = arxiv:1703.04559]
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Last modified: Thu Aug 1 12:06:05 2024
Author: hamarneh.
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