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Publications about 'Datasets'
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Articles in journal, book chapters
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Ashish Sinha,
Jeremy Kawahara,
Arezou Pakzad,
Kumar Abhishek,
Matthieu Ruthven,
Enjie Ghorbel,
Anis Kacem,
Djamila Aouada,
and Ghassan Hamarneh.
DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images (Sinha, Kawahara, Pakzad: Joint first authors).
Medical Image Analysis (MedIA),
000(103145):000,
2024.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Segmentation,
Synthesis/Simulation/Augmentation,
Datasets.
[bibtex-key = media2024]
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Ben Cardoen,
Hanene Ben Yedder,
Sieun Lee,
Ivan Robert Nabi,
and Ghassan Hamarneh.
DataCurator.jl: Efficient, portable, and reproducible validation, curation, and transformation of large heterogeneous datasets using human-readable recipes compiled into machine verifiable templates.
BioInformatics Advances,
3(1-5):000-000,
2023.
Keyword(s): Microscopy,
Processing,
Single Molecule Localization,
Super Resolution Microscopy,
Software and Tools,
Reproducibility.
[bibtex-key = bioinfadv2023]
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Mengliu Zhao,
Jeremy Kawahara,
Kumar Abhishek,
Sajjad Shamanian,
and Ghassan Hamarneh.
Skin3D: Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Textured Meshes (Zhao and Kawahara: Joint first authors).
Medical Image Analysis (MedIA),
77(102329):1-10,
2022.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Optimization,
Registration and Matching,
Graph based,
Tracking,
Datasets.
[bibtex-key = media2022]
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Jeremy Kawahara,
Sara Daneshvar,
Giuseppe Argenziano,
and Ghassan Hamarneh.
Seven-Point Checklist and Skin Lesion Classification using Multi-Task Multi-Modal Neural Net.
IEEE Journal of Biomedical and Health Informatics (IEEE JBHI) (Special Issue on Skin Lesion Image Analysis for Melanoma Detection),
23(2):538-546,
2019.
Keyword(s): Color/Multichannel/Vector-valued,
Deep Learning,
Dermatology,
Classification,
Multimodal,
Datasets.
[bibtex-key = jbhi2019a]
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Aicha BenTaieb,
Hector Li-Chang,
David Huntsman,
and Ghassan Hamarneh.
A Structured Latent Model for Ovarian Carcinoma Subtyping from Histopathology Slides.
Medical Image Analysis (MedIA),
39:194-205,
2017.
Keyword(s): Color/Multichannel/Vector-valued,
Machine Learning,
Microscopy,
Deep Learning,
Datasets.
[bibtex-key = media2017]
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Brian G. Booth,
Steven Miller,
Colin J. Brown,
Kenneth Poskitt,
Vann Chau,
Ruth Grunau,
Anne Synnes,
and Ghassan Hamarneh.
STEAM - Statistical Template Estimation for Abnormality Mapping: a Personalized DTI Analysis Technique with Applications to the Screening of Preterm Infants.
NeuroImage,
125:705-723,
2015.
Keyword(s): Diffusion MRI/Tensor-valued,
Neurodevelopment,
Connectome,
Datasets,
Synthesis/Simulation/Augmentation.
[bibtex-key = neuroimage2015]
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Hengameh Mirzaalian,
Tim K. Lee,
and Ghassan Hamarneh.
Hair Enhancement in Dermoscopic Images using Dual-Channel Quaternion Tubularness Filters and MRF-based Multi-Label Optimization.
IEEE Transactions on Image Processing (IEEE TIP),
23(12):5486-5496,
2014.
Keyword(s): Anatomical Trees and Tubular Structures,
Processing,
Color/Multichannel/Vector-valued,
Dermatology,
Synthesis/Simulation/Augmentation,
Datasets.
[bibtex-key = tip2014]
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Preet Jassi and Ghassan Hamarneh.
VascuSynth: Vascular Tree Synthesis Software.
Insight Journal,
January-June:1-12,
2011.
Keyword(s): Segmentation,
Validation,
Shape Modelling and Analysis,
Software and Tools,
Anatomical Trees and Tubular Structures,
Synthesis/Simulation/Augmentation,
Datasets.
[bibtex-key = ij2011]
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Siyi Du,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets.
In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC),
pages 000–000,
2023.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Segmentation,
Transformers.
[bibtex-key = miccai_isic2023b]
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Siyi Du,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets Segmentation.
In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI),
pages 000-000,
2023.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Transformers,
Classification.
[bibtex-key = miccai2023]
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Ben Cardoen,
Timothy H. Wong,
Parsa Alan,
Sieun Lee,
Joanne Aiko Matsubara,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Self-tuning Weakly Supervised Object Detection (SPECHT) of Sub-Diffraction Limited Caveolae and Scaffold and Amyloid-Beta Deposits.
In American Society of Cell Biology -- Cell Bio 2021,
2021.
Keyword(s): Object Detection,
Super Resolution Microscopy,
Belief Theory,
Datasets.
[bibtex-key = cellbio2021]
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Kumar Abhishek,
Aditi Jain,
and Ghassan Hamarneh.
Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets.
Technical report arXiv:2401.14497,
1 2024.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Software and Tools,
Datasets.
[bibtex-key = arxiv:2401.14497]
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Ben Cardoen,
Hanene Ben Yedder,
Sieun Lee,
Ivan Robert Nabi,
and Ghassan Hamarneh.
DataCurator.jl: Efficient, portable, and reproducible validation, curation, and transformation of large heterogeneous datasets using human-readable recipes compiled into machine verifiable templates.
Technical report techrxiv:22060118,
2 2023.
Keyword(s): Microscopy,
Processing,
Single Molecule Localization,
Super Resolution Microscopy,
Software and Tools,
Reproducibility.
[bibtex-key = techrxiv_22060118]
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Siyi Du,
Nourhan Bayasi,
Ghassan Hamarneh,
and Rafeef Garbi.
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets Segmentation.
Technical report arxiv.2307.02100,
7 2023.
Keyword(s): Dermatology,
Color/Multichannel/Vector-valued,
Machine Learning,
Deep Learning,
Transformers,
Classification.
[bibtex-key = arxiv:2307.02100]
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Ashish Sinha,
Jeremy Kawahara,
Arezou Pakzad,
Kumar Abhishek,
Matthieu Ruthven,
Enjie Ghorbel,
Anis Kacem,
Djamila Aouada,
and Ghassan Hamarneh.
DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images (Sinha, Kawahara, Pakzad: Joint first authors).
Technical report arxiv.2305.12621,
5 2023.
Keyword(s): Dermatology,
Machine Learning,
Deep Learning,
Segmentation,
Synthesis/Simulation/Augmentation,
Datasets.
[bibtex-key = arxiv:2305.12621]
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Ben Cardoen,
Timothy H. Wong,
Parsa Alan,
Sieun Lee,
Joanne Aiko Matsubara,
Ivan Robert Nabi,
and Ghassan Hamarneh.
SPECHT: Self-tuning Plausibility Based Object Detection Enables Quantification of Conflict in Heterogeneous Multi-scale Microscopy (Nabi and Hamarneh: Joint senior authors).
Technical report techrxiv:12971051,
9 2020.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Machine Learning,
Processing,
Belief Theory,
Object Detection,
Datasets.
[bibtex-key = techrxiv_12971051]
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Last modified: Thu Aug 1 12:06:05 2024
Author: hamarneh.
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