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Publications of Fanrui Meng at Hamarneh Lab
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Articles in journal, book chapters
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Ismail M. Khater,
Stephane Aroca-Ouellette,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Caveolae and scaffold detection from single molecule localization microscopy data using deep learning.
PLOS ONE,
14(8):1-17,
2019.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Deep Learning,
Machine Learning,
Classification,
Graph based,
Biomarkers/Biosignatures.
[bibtex-key = plosone2019]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Identification of Caveolin-1 Domain Signatures via Graphlet Analysis of Single Molecule Super-Resolution Data.
Bioinformatics,
35(18):3468-3475,
2019.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning,
Graphlets,
Graph based,
Biomarkers/Biosignatures.
[bibtex-key = bioinformatics2019]
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Ismail M. Khater,
Fanrui Meng,
Timothy H. Wong,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Super Resolution Network Analysis Defines the Molecular Architecture of Caveolae and Caveolin-1 Scaffolds.
Nature - Scientific reports,
8(9009):1-15,
2018.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = nature_sr2018]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Caveolin-1 Domain Characterization Using Machine Learning and Graphlet Analysis of Single Molecule Super Resolution Microscopy.
In American Society for Cell Biology and European Molecular Biology Organization (ASCB-EMBO), San Diego, USA,
pages 1342 (Abstract P2706),
2018.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning,
Graphlets,
Graph based,
Biomarkers/Biosignatures.
[bibtex-key = ascb2018a]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Characterization of caveolin-1 domains via graphlet decomposition of SMLM super resolution data.
In Genesis BME day, Vancouver, Canada,
pages 1,
2018.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning,
Graphlets,
Graph based,
Biomarkers/Biosignatures.
[bibtex-key = bme2018]
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Ismail M. Khater,
Youtao Liu,
Qian Liu,
Fanrui Meng,
Keng C. Chou,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Distinguishing Biological and Non-Biological Networks in Single Molecule Localization Super Resolution Microscopy.
In American Society for Cell Biology and European Molecular Biology Organization (ASCB-EMBO), Philadelphia, USA,
pages 1,
2017.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = ascb2017]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Filtering, Segmenting, and Quantifying Caveolin-1 Protein Clusters in 3D Super-Resolution Microscopy via Machine-Learning and Network Analysis.
In SIAM-IMAGING Manitoba Workshop on Mathematical Imaging Science, Winnipeg, Canada,
pages 1,
2017.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = siam2017a]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Filtering, Segmenting, and Quantifying Caveolin-1 Protein Clusters in 3D Super-Resolution Microscopy via Machine-Learning and Network Analysis.
In 2nd Annual Health Technology Symposium, Vancouver, Canada,
pages 1,
2017.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = healthtech2017d]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Filtering, Segmenting, and Quantifying Caveolin-1 Protein Clusters in 3D Super-Resolution Microscopy via Machine-Learning and Network Analysis.
In Gordon Research Conference, Andover, NH, USA,
pages 1,
2017.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = gordon2017a]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Molecular Level Quantification of Cav1 Clusters in Super-Resolution Imaging Data.
In Frontiers in Biophysics, Vancouver, Canada,
pages 1,
2017.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = frontiers_biophysics2017]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Defining caveolae and scaffolds by computational network analysis of particle localization super-resolution microscopy.
In American Society for Cell Biology (ASCB), San Francisco, California,
pages 1,
2016.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = ascb2016]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Discovering Biosignatures of Cav1 Domains: Computational Methods for Super-resolution Microscopy.
In LSI Imaging Super-resolution Mini-symposium, Vancouver, Canada,
pages 1,
2016.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = superres2016]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Quantifying Caveolin-1 Molecular Domains via Machine Learning and Computational Network Analysis of Super-resolution Microscopy Data.
In Bringing the ASCB to the LSI Imaging Mini-symposium, Vancouver, Canada,
pages 1,
2016.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = ascblsi2016]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Identifying Sub-Cellular Domains in PC3 cells by Analysing Caveolin-1 Proteins from Nanoscopy Super-Resolution Data.
In NanoLytica, Burnaby, Canada,
pages 1,
2015.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = nanolytica2015]
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Ismail M. Khater,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Super-resolution analysis of Caveolae and Cav1 scaffolds in Prostate Cancer Cells.
In Advanced Structural and Chemical Imaging (ASCI) Symposium, Pullman, Washington,
pages 1,
2015.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = asci2015]
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Fanrui Meng,
Ismail M. Khater,
Ghassan Hamarneh,
and Ivan Robert Nabi.
Super-resolution analysis of Caveolae and Cav1 scaffolds in Prostate Cancer Cells.
In Canadian Cytometry and Microscopy Association (CCMA), Toronto, Canada,
pages 1,
2015.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = ccma2015]
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Ismail M. Khater,
Stephane Aroca-Ouellette,
Fanrui Meng,
Ivan Robert Nabi,
and Ghassan Hamarneh.
Caveolae and scaffold detection from single molecule localization microscopy data using deep learning.
Technical report biorxiv:495382,
1 2019.
Keyword(s): Super Resolution Microscopy,
Single Molecule Localization Microscopy,
Machine Learning,
Deep Learning,
Network Modelling and Analysis,
Machine Learning.
[bibtex-key = biorxiv_2019_526327]
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Last modified: Thu Aug 1 12:06:05 2024
Author: hamarneh.
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