1. Shawn Andrews. Fully Automated Medical Image Analysis Facilitating Subsequent User Analysis. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, July 2014. [bibtex-key = phd2014andrews]

1. Shawn Andrews and Ghassan Hamarneh. The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation. IEEE Transactions on Medical Imaging (IEEE TMI), 34(9):1773-1787, 2015. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2015a]



2. Shawn Andrews, Neda Changizi, and Ghassan Hamarneh. The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation. IEEE Transactions on Medical Imaging (IEEE TMI), 33(9):1890-1899, 2014. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2014b]



3. Colin J. Brown, Steven Miller, Brian G. Booth, Shawn Andrews, Vann Chau, Ken Poskitt, and Ghassan Hamarneh. Structural Network Analysis of Brain Development in Young Preterm Neonates. NeuroImage, 101(0):667-680, 2014. Keyword(s): Diffusion MRI/Tensor-valued, Neurodevelopment, Connectome. [bibtex-key = neuroimage2014]

1. Lisa Y. W. Tang, Shawn Andrews, and Ghassan Hamarneh. Random Walker Image Registration with Inverse Consistency. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 837-840, 2015. Keyword(s): Registration and Matching, Uncertainty. [bibtex-key = isbi2015b]



2. Shawn Andrews, Lisa Y. W. Tang, and Ghassan Hamarneh. Fast Random Walker Image Registration using Precomputation. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 189-192, 2014. Keyword(s): Registration and Matching, Fast MIA. [bibtex-key = isbi2014d]



3. Shawn Andrews, Lisa Y. W. Tang, and Ghassan Hamarneh. Topology Preservation and Anatomical Feasibility in Random Walker Image Registration. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 8673, pages 210-217, 2014. Keyword(s): Registration and Matching. [bibtex-key = miccai2014a]



4. Colin J. Brown, Steven Miller, Brian G. Booth, Shawn Andrews, Vann Chau, Ken Poskitt, and Ghassan Hamarneh. Analysis of Structural Connectome Development in Healthy Preterm Neonates. In Annual Neuroscience Extravaganza, Brain Research Centre, UBC, 2014. Keyword(s): Diffusion MRI/Tensor-valued, Neurodevelopment. [bibtex-key = neuroscix2014]



5. Tayebeh Lotfi, Lisa Y. W. Tang, Shawn Andrews, and Ghassan Hamarneh. Improving probabilistic image registration via reinforcement learning and uncertainty evaluation. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 8184, pages 188-195, 2013. Keyword(s): Uncertainty, Registration and Matching, Machine Learning. [bibtex-key = miccai_mlmi2013b]



6. Masoud Nosrati, Shawn Andrews, and Ghassan Hamarneh. Bounded Labeling Function for Global Segmentation of Multi-Part Objects with Geometric Constraints. In IEEE International Conference on Computer Vision (IEEE ICCV), pages 2032-2039, 2013. Keyword(s): Optimization, Segmentation. [bibtex-key = iccv2013]



7. Shawn Andrews, Brian G. Booth, Steven Miller, Vann Chau, Ken Poskitt, and Ghassan Hamarneh. Towards highly-automated detection of white matter injury in prematurely born babies from diffusion tensor MRI. In NeuroDevNet Brain Development Conference, pages 99, 2012. Keyword(s): Diffusion MRI/Tensor-valued, Neurodevelopment. [bibtex-key = neurodevnet2012]



8. Shawn Andrews, Ghassan Hamarneh, Azadeh Yazdanpanah, Bahareh HajGhanbari, and W. Darlene Reid. Probabilistic Multi-Shape Segmentation of Knee Extensor and Flexor Muscles. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6893, pages 651-658, 2011. Keyword(s): Segmentation, Uncertainty, Optimization. [bibtex-key = miccai2011a]



9. Shawn Andrews, Chris McIntosh, and Ghassan Hamarneh. Convex Multi-Region Probabilistic Segmentation with Shape Prior in the Isometric Logratio Transformation Space. In IEEE International Conference on Computer Vision (IEEE ICCV), pages 2096-2103, 2011. Keyword(s): Optimization, Segmentation, Uncertainty. [bibtex-key = iccv2011]



10. Shawn Andrews, Ghassan Hamarneh, and Ahmed Saad. Fast Random Walker with Priors using Precomputation for Interactive Medical Image Segmentation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 9-16, 2010. Keyword(s): Segmentation, Graph based. [bibtex-key = miccai2010b]

1. Shawn Andrews and Ghassan Hamarneh. Adaptable Precomputation for Random Walker Image Segmentation and Registration. Technical report arxiv:1607.04174, 7 2016. Keyword(s): Segmentation, Registration and Matching, Optimization, Uncertainty. [bibtex-key = arxiv:1607.04174]



2. Shawn Andrews and Ghassan Hamarneh. Multi-Region Probabilistic Dice Similarity Coefficient using the Aitchison Distance and Bipartite Graph Matching. Technical report arxiv:1509.07244, 9 2015. Keyword(s): Segmentation, Validation, Graph based, Registration and Matching. [bibtex-key = arxiv:1509.07244]



3. Shawn Andrews, Chris McIntosh, and Ghassan Hamarneh. Convex Multi-Region Probabilistic Segmentation with Shape Prior in the Isometric Logratio Transformation Space. Technical report TR 2011-03, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, July 2011. Keyword(s): Optimization, Segmentation, Uncertainty. [bibtex-key = sfu_cs2011_03]



4. Shawn Andrews, Ghassan Hamarneh, and Ahmed Saad. Fast Random Walker with Priors using Precomputation for Interactive Medical Image Segmentation. Technical report TR 2010-07, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 6 2010. Keyword(s): Segmentation, Graph based, Fast MIA. [bibtex-key = sfu_cs2010_07]

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